2VNY Transferase date Feb 08, 2008
title Structure Of Pka-Pkb Chimera Complexed With (1-(9h-Purin-6- Yl)Piperidin-4-Yl)Amine
authors J.J.Caldwell, T.G.Davies, A.Donald, T.Mchardy, M.G.Rowlands, G.W.Aherne, L.K.Hunter, K.Taylor, R.Ruddle, F.I.Raynaud, M.Verdonk, P.Workman, M.D.Garrett, I.Collins
compound source
Molecule: Camp-Dependent Protein Kinase, Alpha-Catalytic Subunit;
Chain: A
Synonym: Pka C-Alpha, Protein Kinase A
Ec: 2.7.11.11
Engineered: Yes
Mutation: Yes
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Camp-Dependent Protein Kinase Inhibitor Alpha
Chain: I
Fragment: Residues 6-25
Synonym: Pki-Alpha, Camp- Dependent Protein Kinase Inhibitor, Musclebrain Isoform, Pki

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 21 21 21
R_factor 0.223 R_Free 0.292
crystal
cell
length a length b length c angle alpha angle beta angle gamma
72.859 74.783 79.928 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.96 Å
ligand M02, SEP, TPO enzyme Transferase E.C.2.7.11.11 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


I


Primary referenceIdentification of 4-(4-Aminopiperidin-1-yl)-7H-pyrrolo[2,3-d]pyrimidines as Selective Inhibitors of Protein Kinase B through Fragment Elaboration., Caldwell JJ, Davies TG, Donald A, McHardy T, Rowlands MG, Aherne GW, Hunter LK, Taylor K, Ruddle R, Raynaud FI, Verdonk M, Workman P, Garrett MD, Collins I, J Med Chem. 2008 Apr 10;51(7):2147-57. Epub 2008 Mar 18. PMID:18345609
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (75 Kb) [Save to disk]
  • Biological Unit Coordinates (2vny.pdb1.gz) 69 Kb
  • LPC: Ligand-Protein Contacts for 2VNY
  • CSU: Contacts of Structural Units for 2VNY
  • Likely Quarternary Molecular Structure file(s) for 2VNY
  • Structure Factors (538 Kb)
  • Retrieve 2VNY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2VNY from S2C, [Save to disk]
  • Re-refined 2vny structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2VNY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2VNY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2VNY, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2vny] [2vny_I] [2vny_A]
  • SWISS-PROT database: [P61925] [P00517]
  • Domain organization of [IPKA_HUMAN] [KAPCA_BOVIN] by SWISSPFAM
  • Domains found in 2VNY: [S_TK_X] [S_TKc ] by SMART
  • Other resources with information on 2VNY
  • Community annotation for 2VNY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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