2VO7	Transferase	date	Feb 08, 2008
title	Structure Of Pka Complexed With 4-(4-Chlorobenzyl)-1-(7h- Pyrrolo(2,3-D)Pyrimidin-4-Yl)Piperidin-4-Ylamine
authors	J.J.Caldwell, T.G.Davies, A.Donald, T.Mchardy, M.G.Rowlands, G.W.Aherne, L.K.Hunter, K.Taylor, R.Ruddle, F.I.Raynaud, M.Verdonk, P.Workman, M.D.Garrett, I.Collins
compound		source
Molecule: Camp-Dependent Protein Kinase, Alpha-Catalytic Subunit; Chain: A Synonym: Protein Kinase A, Pka C-Alpha Ec: 2.7.11.11 Engineered: Yes		Organism_scientific: Bos Taurus Organism_common: Bovine Organism_taxid: 9913 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Camp-Dependent Protein Kinase Inhibitor Alpha Chain: I Fragment: Residues 6-25 Synonym: Pki, Pki-Alpha, Camp- Dependent Protein Kinase Inhibitor, Musclebrain Isoform		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: P 21 21 21	R_factor 0.188 R_Free 0.241
crystal cell	length a length b length c angle alpha angle beta angle gamma 72.488 75.143 80.203 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.98 Å
ligand	M05, SEP, TPO	enzyme	Transferase E.C.2.7.11.11 BRENDA
Gene Ontology	Chain Function Process Component A I
Primary reference	Identification of 4-(4-Aminopiperidin-1-yl)-7H-pyrrolo[2,3-d]pyrimidines as Selective Inhibitors of Protein Kinase B through Fragment Elaboration., Caldwell JJ, Davies TG, Donald A, McHardy T, Rowlands MG, Aherne GW, Hunter LK, Taylor K, Ruddle R, Raynaud FI, Verdonk M, Workman P, Garrett MD, Collins I, J Med Chem. 2008 Apr 10;51(7):2147-57. Epub 2008 Mar 18. PMID:18345609

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (75 Kb) [Save to disk] Biological Unit Coordinates (2vo7.pdb1.gz) 69 Kb LPC: Ligand-Protein Contacts for 2VO7 CSU: Contacts of Structural Units for 2VO7 Likely Quarternary Molecular Structure file(s) for 2VO7 Structure Factors (515 Kb) Retrieve 2VO7 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2VO7 from S2C, [Save to disk] Re-refined 2vo7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2VO7 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2VO7

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2VO7, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2vo7_A] [2vo7] [2vo7_I] SWISS-PROT database: [P61925] [P00517] Domain organization of [IPKA_HUMAN] [KAPCA_BOVIN] by SWISSPFAM Domains found in 2VO7: [S_TK_X] [S_TKc ] by SMART

Other resources with information on 2VO7

Community annotation for 2VO7 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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