2VOK Immune System date Feb 19, 2008
title Murine Trim21
authors A.H.Keeble, Z.Khan, A.Forster, L.C.James
compound source
Molecule: 52 Kda Ro Protein
Chain: A, B
Synonym: Trim21, Sjoegren Syndrome Type A Antigen, Ss-A, Ro Kda Ribonucleoprotein Autoantigen Ross-A, Tripartite Motif Containing Protein 21;
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.214 R_Free 0.236
crystal
cell
length a length b length c angle alpha angle beta angle gamma
62.955 44.889 71.794 90.00 109.89 90.00
method X-Ray Diffractionresolution 1.30 Å
Primary referenceTRIM21 is an IgG receptor that is structurally, thermodynamically, and kinetically conserved., Keeble AH, Khan Z, Forster A, James LC, Proc Natl Acad Sci U S A. 2008 Apr 22;105(16):6045-50. Epub 2008 Apr 17. PMID:18420815
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (74 Kb) [Save to disk]
  • Biological Unit Coordinates (2vok.pdb1.gz) 68 Kb
  • CSU: Contacts of Structural Units for 2VOK
  • Likely Quarternary Molecular Structure file(s) for 2VOK
  • Structure Factors (1037 Kb)
  • Retrieve 2VOK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2VOK from S2C, [Save to disk]
  • Re-refined 2vok structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2VOK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2VOK
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2VOK, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2vok_A] [2vok] [2vok_B]
  • SWISS-PROT database: [Q62191]
  • Domain organization of [RO52_MOUSE] by SWISSPFAM
  • Domains found in 2VOK: [PRY] [SPRY ] by SMART
  • Other resources with information on 2VOK
  • Community annotation for 2VOK at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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