2VPH Hydrolase date Feb 29, 2008
title Crystal Structure Of The Human Protein Tyrosine Phosphatase, Receptor Type 4, Pdz Domain
authors A.K.Roos, J.Wang, N.Burgess-Brown, J.M.Elkins, K.Kavanagh, A.C.W. P.Filippakopoulos, C.H.Arrowsmith, J.Weigelt, A.Edwards, F.Von C.Bountra, S.Knapp
compound source
Molecule: Tyrosine-Protein Phosphatase Non-Receptor Type 4
Chain: A, B
Fragment: Pdz Domain, Residues 513-606
Synonym: Protein-Tyrosine Phosphatase Meg1, Ptpase-Meg1, Me
Ec: 3.1.3.48
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: R3-Rosetta-Prare2
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: P 21 21 21
R_factor 0.208 R_Free 0.243
crystal
cell
length a length b length c angle alpha angle beta angle gamma
36.489 71.015 71.598 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand
enzyme Hydrolase E.C.3.1.3.48 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (35 Kb) [Save to disk]
  • Biological Unit Coordinates (2vph.pdb1.gz) 30 Kb
  • Biological Unit Coordinates (2vph.pdb2.gz) 16 Kb
  • Biological Unit Coordinates (2vph.pdb3.gz) 15 Kb
  • CSU: Contacts of Structural Units for 2VPH
  • Likely Quarternary Molecular Structure file(s) for 2VPH
  • Structure Factors (194 Kb)
  • Retrieve 2VPH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2VPH from S2C, [Save to disk]
  • Re-refined 2vph structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2VPH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2VPH
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2VPH, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2vph] [2vph_A] [2vph_B]
  • SWISS-PROT database: [P29074]
  • Domain organization of [PTN4_HUMAN] by SWISSPFAM
  • Domain found in 2VPH: [PDZ ] by SMART
    • Other resources with information on 2VPH
  • Community annotation for 2VPH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science