2VPI	Ligase	date	Feb 29, 2008
title	Human Gmp Synthetase - Glutaminase Domain
authors	M.Welin, L.Tresaugues, C.H.Arrowsmith, H.Berglund, R.D.Busam, R.C L.G.Dahlgren, A.M.Edwards, S.Flodin, A.Flores, S.Graslund, M.Ham M.D.Herman, I.Johansson, A.Kallas, T.Karlberg, T.Kotenyova, L.Le M.Moche, M.E.Nilsson, T.Nyman, C.Persson, J.Sagemark, L.Svensson A.G.Thorsell, S.Van Der Berg, J.Weigelt, P.Nordlund, Structural Consortium (Sgc)
compound		source
Molecule: Gmp Synthase Chain: A, B Fragment: Glutaminase Domain, Residues 25-219 Synonym: Glutamine Amidotransferase, Gmp Synthetase Ec: 6.3.5.2 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_variant: R3 Prare Expression_system_plasmid: Pnic-Bsa4
symmetry	Space Group: P 1 21 1	R_factor 0.203 R_Free 0.261
crystal cell	length a length b length c angle alpha angle beta angle gamma 35.680 120.880 47.320 90.00 106.43 90.00
method	X-Ray Diffraction	resolution	2.40 Å
ligand		enzyme	Ligase E.C.6.3.5.2 BRENDA
Gene Ontology	Chain Function Process Component A, B

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (63 Kb) [Save to disk] Biological Unit Coordinates (2vpi.pdb1.gz) 30 Kb Biological Unit Coordinates (2vpi.pdb2.gz) 30 Kb CSU: Contacts of Structural Units for 2VPI Likely Quarternary Molecular Structure file(s) for 2VPI Structure Factors (113 Kb) Retrieve 2VPI in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2VPI from S2C, [Save to disk] Re-refined 2vpi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2VPI in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2VPI

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2VPI, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2vpi_A] [2vpi_B] [2vpi] SWISS-PROT database: [P49915] Domain organization of [GUAA_HUMAN] by SWISSPFAM

Other resources with information on 2VPI

Community annotation for 2VPI at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---