2VPR	Transcription	date	Mar 03, 2008
title	Tet Repressor Class H In Complex With 5a,6- Anhydrotetracycl
authors	L.Schuldt, G.Palm, W.Hinrichs
compound		source
Molecule: Tetracycline Resistance Repressor Protein Chain: A Synonym: Tetracycline Repressor Class H Engineered: Yes		Organism_scientific: Pasteurella Multocida Organism_taxid: 747 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Rb791 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pwh1590
symmetry	Space Group: C 2 2 21	R_factor 0.201 R_Free 0.285
crystal cell	length a length b length c angle alpha angle beta angle gamma 56.361 108.744 68.976 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.49 Å
ligand	MG, SO4, TDC	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Tet repressor induction by tetracycline: a molecular dynamics, continuum electrostatics, and crystallographic study., Aleksandrov A, Schuldt L, Hinrichs W, Simonson T, J Mol Biol. 2008 May 9;378(4):898-912. Epub 2008 Mar 19. PMID:18395746

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (39 Kb) [Save to disk] Biological Unit Coordinates (2vpr.pdb1.gz) 63 Kb LPC: Ligand-Protein Contacts for 2VPR CSU: Contacts of Structural Units for 2VPR Likely Quarternary Molecular Structure file(s) for 2VPR Structure Factors (89 Kb) Retrieve 2VPR in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2VPR from S2C, [Save to disk] Re-refined 2vpr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2VPR in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2VPR

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2VPR, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2vpr] [2vpr_A] SWISS-PROT database: [Q799E2] [P51561] Domain organization of [Q799E2_PASMU] [TETR8_PASMU] by SWISSPFAM

Other resources with information on 2VPR

Community annotation for 2VPR at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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