2VQ5 Lyase date Mar 11, 2008
title X-Ray Structure Of Norcoclaurine Synthase From Thalictrum Fl Complex With Dopamine And Hydroxybenzaldehyde
authors A.Ilari, S.Franceschini, A.Bonamore, A.Boffi
compound source
Molecule: S-Norcoclaurine Synthase
Chain: A, B
Fragment: Residues 16-210
Synonym: Norcoclaurine Synthase From Thalictrum Flavum
Ec: 4.2.1.78
Engineered: Yes
Mutation: Yes
Other_details: The Protein Lacks The First 15 Residues And Tagged At The C-Terminus.
Organism_scientific: Thalictrum Flavum
Organism_taxid: 150094
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21de3
Expression_system_plasmid: Pet22-B
symmetry Space Group: P 31 2 1
R_factor 0.221 R_Free 0.266
crystal
cell
length a length b length c angle alpha angle beta angle gamma
86.474 86.474 117.977 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.09 Å
ligand ACT, CL, HBA, LDP, MSE enzyme Lyase E.C.4.2.1.78 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural basis of enzymatic S-norcoclaurine biosynthesis., Ilari A, Franceschini S, Bonamore A, Arenghi F, Botta B, Macone A, Pasquo A, Bellucci L, Boffi A, J Biol Chem. 2008 Nov 12. PMID:19004827
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (63 Kb) [Save to disk]
  • Biological Unit Coordinates (2vq5.pdb1.gz) 111 Kb
  • LPC: Ligand-Protein Contacts for 2VQ5
  • CSU: Contacts of Structural Units for 2VQ5
  • Likely Quarternary Molecular Structure file(s) for 2VQ5
  • Structure Factors (395 Kb)
  • Retrieve 2VQ5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2VQ5 from S2C, [Save to disk]
  • Re-refined 2vq5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2VQ5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2VQ5
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2VQ5, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2vq5] [2vq5_B] [2vq5_A]
  • SWISS-PROT database: [Q67A25]
  • Domain organization of [NCS_THLFG] by SWISSPFAM
  • Other resources with information on 2VQ5
  • Community annotation for 2VQ5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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