2VR1 Ligase date Mar 24, 2008
title Crystal Structure Of Biotin Carboxylase From E. Coli In Comp Atp Analog, Adpcf2p.
authors I.Mochalkin, G.L.Waldrop
compound source
Molecule: Biotin Carboxylase
Chain: A, B
Synonym: Acetyl-Coa Carboxylase Subunit A, Acc
Ec: 6.3.4.14
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.189 R_Free 0.247
crystal
cell
length a length b length c angle alpha angle beta angle gamma
84.129 106.784 121.910 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand ATF, CL enzyme Ligase E.C.6.3.4.14 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • biotin carboxylase activity


  • Primary referenceStructural evidence for substrate-induced synergism and half-sites reactivity in biotin carboxylase., Mochalkin I, Miller JR, Evdokimov A, Lightle S, Yan C, Stover CK, Waldrop GL, Protein Sci. 2008 Aug 25. PMID:18725455
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (143 Kb) [Save to disk]
  • Biological Unit Coordinates (2vr1.pdb1.gz) 72 Kb
  • Biological Unit Coordinates (2vr1.pdb2.gz) 69 Kb
  • LPC: Ligand-Protein Contacts for 2VR1
  • CSU: Contacts of Structural Units for 2VR1
  • Likely Quarternary Molecular Structure file(s) for 2VR1
  • Structure Factors (242 Kb)
  • Retrieve 2VR1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2VR1 from S2C, [Save to disk]
  • Re-refined 2vr1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2VR1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2VR1
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2VR1, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2vr1_A] [2vr1_B] [2vr1]
  • SWISS-PROT database: [P24182]
  • Domain organization of [ACCC_ECOLI] by SWISSPFAM
  • Domain found in 2VR1: [Biotin_carb_C ] by SMART
  • Other resources with information on 2VR1
  • Community annotation for 2VR1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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