2VRE Isomerase date Mar 31, 2008
title Crystal Structure Of Human Peroxisomal Delta3,5,Delta2,4-Die Isomerase
authors W.Yue, K.Guo, F.Von Delft, E.Pilka, J.Murray, A.Roos, G.Kochan, C.B C.Arrowsmith, M.Wikstrom, A.Edwards, U.Oppermann
compound source
Molecule: Delta(3,5)-Delta(2,4)-Dienoyl-Coa Isomerase
Chain: A, B, C
Fragment: Residues 50-322
Synonym: Peroxisomal Enoyl-Coenzyme A Hydratase-Like Protei
Ec: 5.3.3.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Tissue: Peroxisome
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)-R3-Prare2
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: C 2 2 21
R_factor 0.167 R_Free 0.202
crystal
cell
length a length b length c angle alpha angle beta angle gamma
127.580 137.253 96.137 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.95 Å
ligand CL enzyme Isomerase E.C.5.3.3 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (135 Kb) [Save to disk]
  • Biological Unit Coordinates (2vre.pdb1.gz) 250 Kb
  • LPC: Ligand-Protein Contacts for 2VRE
  • CSU: Contacts of Structural Units for 2VRE
  • Likely Quarternary Molecular Structure file(s) for 2VRE
  • Structure Factors (1157 Kb)
  • Retrieve 2VRE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2VRE from S2C, [Save to disk]
  • Re-refined 2vre structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2VRE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2VRE
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2VRE, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2vre_A] [2vre] [2vre_B] [2vre_C]
  • SWISS-PROT database: [Q13011]
  • Domain organization of [ECH1_HUMAN] by SWISSPFAM
  • Other resources with information on 2VRE
  • Community annotation for 2VRE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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