2VRH Ribosome date Apr 07, 2008
title Structure Of The E. Coli Trigger Factor Bound To A Translati Ribosome
authors F.Merz, D.Boehringer, C.Schaffitzel, S.Preissler, A.Hoffmann, T.M A.Rutkowska, J.Lozza, N.Ban, B.Bukau, E.Deuerling
compound source
Molecule: Trigger Factor
Chain: A
Engineered: Yes
Other_details: Based On Pdb 1w26_a. Residues 22-62 Were Rep The Corresponding Residues Of Pdb 1oms_b;
 Organism_scientific: Escherichia Coli
Organism_taxid: 562
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Other_details: Based On Pdb 1w26_a

Molecule: 50s Ribosomal Protein L23
Chain: B
Other_details: Based On Pdb 2aw4_t
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Other_details: Based On Pdb 2aw4_t

Molecule: 50s Ribosomal Protein L24
Chain: C
Fragment: Residues 2-104
Other_details: Based On Pdb 2aw4_u
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Other_details: Based On Pdb 2aw4_u

Molecule: 50s Ribosomal Protein L29
Chain: D
Other_details: Based On Pdb 2aw4_x
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Other_details: Based On Pdb 2aw4_x
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 19.00 Å
ligand MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • peptidyl-prolyl cis-trans is...


    • B


    C


    D


    Primary referenceMolecular mechanism and structure of Trigger Factor bound to the translating ribosome., Merz F, Boehringer D, Schaffitzel C, Preissler S, Hoffmann A, Maier T, Rutkowska A, Lozza J, Ban N, Bukau B, Deuerling E, EMBO J. 2008 Jun 4;27(11):1622-32. Epub 2008 May 22. PMID:18497744
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (18 Kb) [Save to disk]
  • Biological Unit Coordinates (2vrh.pdb1.gz) 16 Kb
  • LPC: Ligand-Protein Contacts for 2VRH
  • CSU: Contacts of Structural Units for 2VRH
  • Likely Quarternary Molecular Structure file(s) for 2VRH
  • Retrieve 2VRH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2VRH from S2C, [Save to disk]
    • View 2VRH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2VRH
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2VRH, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2vrh_A] [2vrh_C] [2vrh] [2vrh_D] [2vrh_B]
  • SWISS-PROT database: [Q0TCE3] [P60624] [P0A7M6] [P0A850]
  • Domain organization of [RL23_ECOL5] [RL24_ECOLI] [RL29_ECOLI] [TIG_ECOLI] by SWISSPFAM
  • Domain found in 2VRH: [KOW ] by SMART
    • Other resources with information on 2VRH
  • Community annotation for 2VRH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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