2VRN Hydrolase date Apr 09, 2008
title The Structure Of The Stress Response Protein Dr1199 From Dei Radiodurans: A Member Of The Dj-1 Superfamily
authors E.Fioravanti, M.A.Dura, D.Lascoux, E.Micossi, S.Mcsweeney
compound source
Molecule: Protease I
Chain: A, B
Synonym: Dr1199
Engineered: Yes
Other_details: Cysteine 115 Modified To Cysteine Sulfenic A
 Organism_scientific: Deinococcus Radiodurans
Organism_taxid: 243230
Strain: R1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
symmetry Space Group: P 21 21 2
R_factor 0.200 R_Free 0.261
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.838 88.562 64.088 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.15 Å
ligand CSO, MG enzyme
note 2VRN is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure of the Stress Response Protein DR1199 from Deinococcus radiodurans: A Member of the DJ-1 Superfamily., Fioravanti E, Dura MA, Lascoux D, Micossi E, Franzetti B, McSweeney S, Biochemistry. 2008 Oct 14. PMID:18850720
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (66 Kb) [Save to disk]
  • Biological Unit Coordinates (2vrn.pdb1.gz) 59 Kb
  • LPC: Ligand-Protein Contacts for 2VRN
  • CSU: Contacts of Structural Units for 2VRN
  • Likely Quarternary Molecular Structure file(s) for 2VRN
  • Structure Factors (153 Kb)
  • Retrieve 2VRN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2VRN from S2C, [Save to disk]
  • Re-refined 2vrn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2VRN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2VRN
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2VRN, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2vrn_A] [2vrn_B] [2vrn]
  • SWISS-PROT database: [Q9RV31]
  • Domain organization of [Q9RV31_DEIRA] by SWISSPFAM
    • Other resources with information on 2VRN
  • Community annotation for 2VRN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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