2VSH Transferase date Apr 23, 2008
title Synthesis Of Cdp-Activated Ribitol For Teichoic Acid Precurs Streptococcus Pneumoniae
authors S.Baur, J.Marles-Wright, S.Buckenmaier, R.J.Lewis, W.Vollmer
compound source
Molecule: 2-C-Methyl-D-Erythritol 4-Phosphate Cytidylyltran
Chain: A, B
Synonym: Tari
Ec: 2.7.7.60
Organism_scientific: Streptococcus Pneumoniae
Organism_taxid: 1313
Strain: R36a
Atcc: 12214
symmetry Space Group: C 2 2 21
R_factor 0.196 R_Free 0.254
crystal
cell
length a length b length c angle alpha angle beta angle gamma
81.000 93.380 144.190 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand 1PE, CA, P6G, PEG, PG4 enzyme Transferase E.C.2.7.7.60 BRENDA
note 2VSH is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceSynthesis of CDP-activated ribitol for teichoic acid precursors in Streptococcus pneumoniae., Baur S, Marles-Wright J, Buckenmaier S, Lewis RJ, Vollmer W, J Bacteriol. 2008 Dec 12. PMID:19074383
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (156 Kb) [Save to disk]
  • Biological Unit Coordinates (2vsh.pdb1.gz) 149 Kb
  • LPC: Ligand-Protein Contacts for 2VSH
  • CSU: Contacts of Structural Units for 2VSH
  • Likely Quarternary Molecular Structure file(s) for 2VSH
  • Structure Factors (666 Kb)
  • Retrieve 2VSH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2VSH from S2C, [Save to disk]
  • Re-refined 2vsh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2VSH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2VSH
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2VSH, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2vsh_B] [2vsh_A] [2vsh]
  • SWISS-PROT database: [A5MSS9]
  • Domain organization of [A5MSS9_STRPN] by SWISSPFAM
  • Other resources with information on 2VSH
  • Community annotation for 2VSH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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