2VSR	Receptor	date	Apr 29, 2008
title	Hppargamma Ligand Binding Domain In Complex With 9-(S)-Hode
authors	T.Itoh, L.Fairall, J.W.R.Schwabe
compound		source
Molecule: Peroxisome Proliferator-Activated Receptor Gamma Chain: A, B Fragment: Ligand Binding Domain, Residues 202-475 Synonym: Ppar Gamma, Nuclear Receptor Subfamily 1 Group C M Engineered: Yes Other_details: 9-(S)-Hode		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_variant: Rosetta Expression_system_plasmid: Pet30a Modified
symmetry	Space Group: C 1 2 1	R_factor 0.226 R_Free 0.266
crystal cell	length a length b length c angle alpha angle beta angle gamma 93.182 61.674 118.941 90.00 103.02 90.00
method	X-Ray Diffraction	resolution	2.05 Å
ligand	9HO	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structural basis for the activation of PPARgamma by oxidized fatty acids., Itoh T, Fairall L, Amin K, Inaba Y, Szanto A, Balint BL, Nagy L, Yamamoto K, Schwabe JW, Nat Struct Mol Biol. 2008 Sep;15(9):924-31. PMID:19172745

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (90 Kb) [Save to disk] Biological Unit Coordinates (2vsr.pdb1.gz) 44 Kb Biological Unit Coordinates (2vsr.pdb2.gz) 44 Kb LPC: Ligand-Protein Contacts for 2VSR CSU: Contacts of Structural Units for 2VSR Likely Quarternary Molecular Structure file(s) for 2VSR Structure Factors (296 Kb) Retrieve 2VSR in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2VSR from S2C, [Save to disk] Re-refined 2vsr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2VSR in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2VSR

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2VSR, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2vsr_B] [2vsr] [2vsr_A] SWISS-PROT database: [P37231] Domain organization of [PPARG_HUMAN] by SWISSPFAM Domain found in 2VSR: [HOLI ] by SMART

Other resources with information on 2VSR

Community annotation for 2VSR at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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