2VTH	Transferase	date	May 15, 2008
title	Identification Of N-(4-Piperidinyl)-4-(2,6- Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide (At7519), A Novel Cyclin Dependent Kinase Inhibitor Using Fragment- Based X-Ray Crystallography And Structure Based Drug Design
authors	P.G.Wyatt, A.J.Woodhead, J.A.Boulstridge, V.Berdini, M.G.Carr, D. D.Danillon, D.J.Davis, L.A.Devine, T.R.Early, R.E.Feltell, E.J.L R.L.Mcmenamin, E.F.Navarro, M.A.O'Brien, M.O'Reilly, M.Reule, G. L.C.A.Seavers, D.Smith, M.S.Squires, G.Trewartha, M.T.Walker, A.J.Woolford
compound		source
Molecule: Cell Division Protein Kinase 2 Chain: A Synonym: Cdk2, P33 Protein Kinase Ec: 2.7.11.1, 2.7.11.22 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Spodoptera Frugiperda Expression_system_taxid: 7108 Expression_system_cell_line: Sf9 Expression_system_vector_type: Baculovirus
symmetry	Space Group: P 21 21 21	R_factor 0.1982 R_Free 0.2406
crystal cell	length a length b length c angle alpha angle beta angle gamma 53.481 71.648 72.181 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.9 Å
ligand	GOL, LZ2 BindingDB	enzyme	Transferase E.C.2.7.11.1 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Identification of N-(4-piperidinyl)-4-(2,6-dichlorobenzoylamino)-1H-pyrazole-3-carboxamide (AT7519), a novel cyclin dependent kinase inhibitor using fragment-based X-ray crystallography and structure based drug design., Wyatt PG, Woodhead AJ, Berdini V, Boulstridge JA, Carr MG, Cross DM, Davis DJ, Devine LA, Early TR, Feltell RE, Lewis EJ, McMenamin RL, Navarro EF, O'Brien MA, O'Reilly M, Reule M, Saxty G, Seavers LC, Smith DM, Squires MS, Trewartha G, Walker MT, Woolford AJ, J Med Chem. 2008 Aug 28;51(16):4986-99. Epub 2008 Jul 26. PMID:18656911

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (60 Kb) [Save to disk] Biological Unit Coordinates (2vth.pdb1.gz) 52 Kb LPC: Ligand-Protein Contacts for 2VTH CSU: Contacts of Structural Units for 2VTH Likely Quarternary Molecular Structure file(s) for 2VTH Structure Factors (283 Kb) Retrieve 2VTH in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2VTH from S2C, [Save to disk] Re-refined 2vth structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2VTH in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2VTH

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2VTH, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2vth] [2vth_A] SWISS-PROT database: [P24941] Domain organization of [CDK2_HUMAN] by SWISSPFAM Domain found in 2VTH: [S_TKc ] by SMART

Other resources with information on 2VTH

Community annotation for 2VTH at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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