2VTP Transferase date May 15, 2008
title Identification Of N-(4-Piperidinyl)-4-(2,6-Dichlorobenzoylam Pyrazole-3-Carboxamide (At7519), A Novel Cyclin Dependent K Inhibitor Using Fragment-Based X-Ray Crystallography And St Based Drug Design.
authors P.G.Wyatt, A.J.Woodhead, J.A.Boulstridge, V.Berdini, M.G.Carr, D. D.Danillon, D.J.Davis, L.A.Devine, T.R.Early, R.E.Feltell, E.J.L R.L.Mcmenamin, E.F.Navarro, M.A.O'Brien, M.O'Reilly, M.Reule, G. L.C.A.Seavers, D.Smith, M.S.Squires, G.Trewartha, M.T.Walker, A.J.Woolford
compound source
Molecule: Cell Division Protein Kinase 2
Chain: A
Synonym: P33 Protein Kinase, Cdk2, Cyclin Dependent Kinase
Ec: 2.7.11.1, 2.7.11.22
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
symmetry Space Group: P 21 21 21
R_factor 0.186 R_Free 0.247
crystal
cell
length a length b length c angle alpha angle beta angle gamma
53.569 71.774 72.013 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.15 Å
ligand LZ9 BindingDB enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceIdentification of N-(4-piperidinyl)-4-(2,6-dichlorobenzoylamino)-1H-pyrazole-3-carboxamide (AT7519), a novel cyclin dependent kinase inhibitor using fragment-based X-ray crystallography and structure based drug design., Wyatt PG, Woodhead AJ, Berdini V, Boulstridge JA, Carr MG, Cross DM, Davis DJ, Devine LA, Early TR, Feltell RE, Lewis EJ, McMenamin RL, Navarro EF, O'Brien MA, O'Reilly M, Reule M, Saxty G, Seavers LC, Smith DM, Squires MS, Trewartha G, Walker MT, Woolford AJ, J Med Chem. 2008 Aug 28;51(16):4986-99. Epub 2008 Jul 26. PMID:18656911
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (60 Kb) [Save to disk]
  • Biological Unit Coordinates (2vtp.pdb1.gz) 52 Kb
  • LPC: Ligand-Protein Contacts for 2VTP
  • CSU: Contacts of Structural Units for 2VTP
  • Likely Quarternary Molecular Structure file(s) for 2VTP
  • Structure Factors (204 Kb)
  • Retrieve 2VTP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2VTP from S2C, [Save to disk]
  • Re-refined 2vtp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2VTP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2VTP
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2VTP, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2vtp_A] [2vtp]
  • SWISS-PROT database: [P24941]
  • Domain organization of [CDK2_HUMAN] by SWISSPFAM
  • Domain found in 2VTP: [S_TKc ] by SMART
  • Other resources with information on 2VTP
  • Community annotation for 2VTP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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