2VUP	Oxidoreductase	date	May 28, 2008
title	Crystal Structure Of A Type II Tryparedoxin-Dependant Peroxi Trypanosoma Brucei
authors	M.S.Alphey, J.Konig, A.H.Fairlamb
compound		source
Molecule: Glutathione Peroxidase-Like Protein Chain: A Synonym: Tryparedoxin-Dependant Peroxidase, Trypanothionetryparedoxin Dependent Peroxidase 2; Ec: 1.11.1.9 Engineered: Yes		Organism_scientific: Trypanosoma Brucei Organism_taxid: 5691 Strain: 427 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_plasmid: Pet15b
symmetry	Space Group: P 1 21 1	R_factor 0.205 R_Free 0.263
crystal cell	length a length b length c angle alpha angle beta angle gamma 43.260 32.700 58.310 90.00 95.92 90.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand		enzyme	Oxidoreductase E.C.1.11.1.9 BRENDA
Gene Ontology	Chain Function Process Component A peroxidase activity glutathione peroxidase activ...
Primary reference	Structural and mechanistic insights into type II trypanosomatid tryparedoxin-dependant peroxidases., Alphey MS, Konig J, Fairlamb AH, Biochem J. 2008 Jun 4;. PMID:18522537

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (32 Kb) [Save to disk] Biological Unit Coordinates (2vup.pdb1.gz) 28 Kb CSU: Contacts of Structural Units for 2VUP Likely Quarternary Molecular Structure file(s) for 2VUP Structure Factors (67 Kb) Retrieve 2VUP in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2VUP from S2C, [Save to disk] Re-refined 2vup structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2VUP in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2VUP

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2VUP, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2vup_A] [2vup] SWISS-PROT database: [Q869A6] Domain organization of [Q869A6_9TRYP] by SWISSPFAM

Other resources with information on 2VUP

Community annotation for 2VUP at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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