2VV9	Transferase	date	Jun 04, 2008
title	Cdk2 In Complex With An Imidazole Piperazine
authors	D.G.Acton, M.Anderson, D.M.Andrews, A.J.Barker, C.A.Brassington, M.R.Finlay, E.Fisher, S.Gerhardt, M.A.Graham, C.P.Green, D.W.Hea S.A.Loddick, R.Morgentin, J.Read, A.Roberts, J.Stanway, J.A.Tuck H.M.Weir
compound		source
Molecule: Cell Division Protein Kinase 2 Chain: A Synonym: P33 Protein Kinase, Cyclin Dependent Kinase 2 Ec: 2.7.11.22 Engineered: Yes Other_details: Acetylation At N-Terminal Methionine		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Spodoptera Frugiperda Expression_system_taxid: 7108 Expression_system_cell_line: Sf21 Expression_system_vector_type: Baculovirus
symmetry	Space Group: P 21 21 21	R_factor 0.189 R_Free 0.228
crystal cell	length a length b length c angle alpha angle beta angle gamma 53.252 71.153 71.933 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.90 Å
ligand	ACE, IM9 BindingDB	enzyme	Transferase E.C.2.7.11.22 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Imidazole piperazines: SAR and development of a potent class of cyclin-dependent kinase inhibitors with a novel binding mode., Finlay MR, Acton DG, Andrews DM, Barker AJ, Dennis M, Fisher E, Graham MA, Green CP, Heaton DW, Karoutchi G, Loddick SA, Morgentin R, Roberts A, Tucker JA, Weir HM, Bioorg Med Chem Lett. 2008 Aug 1;18(15):4442-6. Epub 2008 Jun 12. PMID:18617397

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk] Biological Unit Coordinates (2vv9.pdb1.gz) 49 Kb LPC: Ligand-Protein Contacts for 2VV9 CSU: Contacts of Structural Units for 2VV9 Likely Quarternary Molecular Structure file(s) for 2VV9 Structure Factors (184 Kb) Retrieve 2VV9 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2VV9 from S2C, [Save to disk] Re-refined 2vv9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2VV9 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2VV9

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2VV9, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2vv9] [2vv9_A] SWISS-PROT database: [P24941] Domain organization of [CDK2_HUMAN] by SWISSPFAM Domain found in 2VV9: [S_TKc ] by SMART

Other resources with information on 2VV9

Community annotation for 2VV9 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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