2VVA Lyase date Jun 04, 2008
title Human Carbonic Anhydrase In Complex With Co2
authors B.Sjoeblom, M.Polentarutti, K.Djinovic-Carugo
compound source
Molecule: Carbonic Anhydrase 2
Chain: X
Synonym: Carbonic Anhydrase II, Carbonate Dehydratase II, C Anhydrase C, Cac, Ca-II;
Ec: 4.2.1.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.153 R_Free 0.200
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.589 41.577 72.636 90.00 104.84 90.00
method X-Ray Diffractionresolution 1.56 Å
ligand CO2, GOL, SO4, ZN BindingDB enzyme Lyase E.C.4.2.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
X


Primary referenceStructural study of X-ray induced activation of carbonic anhydrase., Sjoblom B, Polentarutti M, Djinovic-Carugo K, Proc Natl Acad Sci U S A. 2009 Jun 30;106(26):10609-13. Epub 2009 Jun 11. PMID:19520834
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk]
  • Biological Unit Coordinates (2vva.pdb1.gz) 49 Kb
  • LPC: Ligand-Protein Contacts for 2VVA
  • CSU: Contacts of Structural Units for 2VVA
  • Likely Quarternary Molecular Structure file(s) for 2VVA
  • Structure Factors (432 Kb)
  • Retrieve 2VVA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2VVA from S2C, [Save to disk]
  • Re-refined 2vva structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2VVA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2VVA
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2VVA, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2vva] [2vva_X]
  • SWISS-PROT database: [P00918]
  • Domain organization of [CAH2_HUMAN] by SWISSPFAM
  • Domain found in 2VVA: [Carb_anhydrase ] by SMART
  • Other resources with information on 2VVA
  • Community annotation for 2VVA at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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