2VVL Oxidoreductase date Jun 10, 2008
title The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase From Aspergillus Niger.
authors K.E.Atkin, S.Hart, J.P.Turkenburg, A.M.Brzozowski, G.J.Grogan
compound source
Molecule: Monoamine Oxidase N
Chain: A, B, C, D, E, F, H
Synonym: Monoamine Oxidase, Mao-N
Ec: 1.4.3.4
Engineered: Yes
Mutation: Yes
Other_details: Flavin Adenine Dinucleotide Cofactor
Organism_scientific: Aspergillus Niger
Organism_taxid: 5061
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta 2(De3)
Expression_system_vector: Ysblic3c

Molecule: Monoamine Oxidase N
Chain: G
Synonym: Monoamine Oxidase, Mao-N
Ec: 1.4.3.4
Engineered: Yes
Mutation: Yes
Other_details: Flavin Adenine Dinucleotide Cofactor

Organism_scientific: Aspergillus Niger
Organism_taxid: 5061
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta 2(De3)
Expression_system_vector: Ysblic3c
symmetry Space Group: P 1 21 1
R_factor 0.182 R_Free 0.236
crystal
cell
length a length b length c angle alpha angle beta angle gamma
103.287 187.248 132.432 90.00 90.10 90.00
method X-Ray Diffractionresolution 2.45 Å
ligand EDO, FAD enzyme Oxidoreductase E.C.1.4.3.4 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B, H, C, D, G


Primary referenceThe structure of monoamine oxidase from Aspergillus niger provides a molecular context for improvements in activity obtained by directed evolution., Atkin KE, Reiss R, Koehler V, Bailey KR, Hart S, Turkenburg JP, Turner NJ, Brzozowski AM, Grogan G, J Mol Biol. 2008 Dec 31;384(5):1218-31. Epub 2008 Oct 14. PMID:18951902
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (642 Kb) [Save to disk]
  • Biological Unit Coordinates (2vvl.pdb1.gz) 166 Kb
  • Biological Unit Coordinates (2vvl.pdb2.gz) 165 Kb
  • Biological Unit Coordinates (2vvl.pdb3.gz) 164 Kb
  • Biological Unit Coordinates (2vvl.pdb4.gz) 164 Kb
  • LPC: Ligand-Protein Contacts for 2VVL
  • CSU: Contacts of Structural Units for 2VVL
  • Likely Quarternary Molecular Structure file(s) for 2VVL
  • Structure Factors (1400 Kb)
  • Retrieve 2VVL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2VVL from S2C, [Save to disk]
  • Re-refined 2vvl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2VVL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2VVL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2VVL, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2vvl_H] [2vvl] [2vvl_A] [2vvl_E] [2vvl_D] [2vvl_B] [2vvl_G] [2vvl_C] [2vvl_F]
  • SWISS-PROT database: [P46882]
  • Domain organization of [AOFN_ASPNG] by SWISSPFAM
  • Other resources with information on 2VVL
  • Community annotation for 2VVL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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