2VVM	Oxidoreductase	date	Jun 10, 2008
title	The Structure Of Mao-N-D5, A Variant Of Monoamine Oxidase From Aspergillus Niger.
authors	K.E.Atkin, S.Hart, J.P.Turkenburg, A.M.Brzozowski, G.J.Grogan
compound		source
Molecule: Monoamine Oxidase N Chain: A, B Synonym: Monoamine Oxidase, Mao-N Ec: 1.4.3.4 Engineered: Yes Mutation: Yes Other_details: Flavin Adenine Dinucleotide Cofactor		Organism_scientific: Aspergillus Niger Organism_taxid: 5061 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Rosetta 2 De3 Expression_system_vector: Ysblic3c
symmetry	Space Group: P 43 21 2	R_factor 0.181 R_Free 0.205
crystal cell	length a length b length c angle alpha angle beta angle gamma 107.419 107.419 235.400 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.85 Å
ligand	EDO, FAD, PRO	enzyme	Oxidoreductase E.C.1.4.3.4 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	The structure of monoamine oxidase from Aspergillus niger provides a molecular context for improvements in activity obtained by directed evolution., Atkin KE, Reiss R, Koehler V, Bailey KR, Hart S, Turkenburg JP, Turner NJ, Brzozowski AM, Grogan G, J Mol Biol. 2008 Dec 31;384(5):1218-31. Epub 2008 Oct 14. PMID:18951902

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (176 Kb) [Save to disk] Biological Unit Coordinates (2vvm.pdb1.gz) 169 Kb LPC: Ligand-Protein Contacts for 2VVM CSU: Contacts of Structural Units for 2VVM Likely Quarternary Molecular Structure file(s) for 2VVM Structure Factors (1834 Kb) Retrieve 2VVM in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2VVM from S2C, [Save to disk] Re-refined 2vvm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2VVM in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2VVM

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2VVM, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2vvm] [2vvm_B] [2vvm_A] SWISS-PROT database: [P46882] Domain organization of [AOFN_ASPNG] by SWISSPFAM

Other resources with information on 2VVM

Community annotation for 2VVM at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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