2VWD	Hydrolase	date	Jun 20, 2008
title	Nipah Virus Attachment Glycoprotein
authors	T.A.Bowden, M.Crispin, D.J.Harvey, A.R.Aricescu, J.M.Grimes, E.Y. D.I.Stuart
compound		source
Molecule: Hemagglutinin-Neuraminidase Chain: A, B Fragment: Receptor-Binding Domain, Residues 183-602 Synonym: Niv-G Engineered: Yes		Organism_scientific: Nipah Virus Organism_taxid: 121791 Expression_system: Homo Sapiens Expression_system_taxid: 9606 Expression_system_cell_line: Hek293t Expression_system_plasmid: Phlsec Other_details: Synthetically Optimized Cdna (Geneart)
symmetry	Space Group: P 1 21 1	R_factor 0.172 R_Free 0.221
crystal cell	length a length b length c angle alpha angle beta angle gamma 71.633 86.936 82.903 90.00 108.32 90.00
method	X-Ray Diffraction	resolution	2.25 Å
ligand	CL, GBL, NAG	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Crystal Structure and Carbohydrate Analysis of Nipah Virus Attachment Glycoprotein: A Template for Antiviral and Vaccine Design., Bowden TA, Crispin M, Harvey DJ, Aricescu AR, Grimes JM, Jones EY, Stuart DI, J Virol. 2008 Sep 24. PMID:18815311

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (149 Kb) [Save to disk] Biological Unit Coordinates (2vwd.pdb1.gz) 72 Kb Biological Unit Coordinates (2vwd.pdb2.gz) 72 Kb LPC: Ligand-Protein Contacts for 2VWD CSU: Contacts of Structural Units for 2VWD Likely Quarternary Molecular Structure file(s) for 2VWD Structure Factors (624 Kb) Retrieve 2VWD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2VWD from S2C, [Save to disk] Re-refined 2vwd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2VWD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2VWD

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2VWD, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2vwd_A] [2vwd] [2vwd_B] SWISS-PROT database: [Q9IH62] Domain organization of [GLYCP_NIPAV] by SWISSPFAM

Other resources with information on 2VWD

Community annotation for 2VWD at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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