2VWO	Blood Clotting	date	Jun 26, 2008
title	Aminopyrrolidine Factor Xa Inhibitor
authors	K.Groebke-Zbinden, D.W.Banner, J.M.Benz, F.Blasco, G.Decoret, J.H B.Kuhn, N.Panday, F.Ricklin, P.Risch, D.Schlatter, M.Stahl, R.Ung
compound		source
Molecule: Activated Factor Xa Heavy Chain Chain: A Fragment: Peptidase S1 Domain, Residues 235-475 Ec: 3.4.21.6 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Factor X Light Chain Chain: L Fragment: Egf2, Residues 126-180 Ec: 3.4.21.6 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 43 21 2	R_factor 0.194 R_Free 0.228
crystal cell	length a length b length c angle alpha angle beta angle gamma 105.281 105.281 49.405 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.60 Å
ligand	CA, CL, LZG, NA BindingDB	enzyme	Hydrolase E.C.3.4.21.6 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Design of novel aminopyrrolidine factor Xa inhibitors from a screening hit., Zbinden KG, Anselm L, Banner DW, Benz J, Blasco F, Decoret G, Himber J, Kuhn B, Panday N, Ricklin F, Risch P, Schlatter D, Stahl M, Thomi S, Unger R, Haap W, Eur J Med Chem. 2009 Jul;44(7):2787-95. Epub 2009 Jan 3. PMID:19200624

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (59 Kb) [Save to disk] Biological Unit Coordinates (2vwo.pdb1.gz) 51 Kb Biological Unit Coordinates (2vwo.pdb2.gz) 45 Kb Biological Unit Coordinates (2vwo.pdb3.gz) 9 Kb LPC: Ligand-Protein Contacts for 2VWO CSU: Contacts of Structural Units for 2VWO Likely Quarternary Molecular Structure file(s) for 2VWO Structure Factors (811 Kb) Retrieve 2VWO in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2VWO from S2C, [Save to disk] Re-refined 2vwo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2VWO in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2VWO

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2VWO, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2vwo] [2vwo_A] [2vwo_L] SWISS-PROT database: [P00742] Domain organization of [FA10_HUMAN] by SWISSPFAM Domains found in 2VWO: [EGF] [Tryp_SPc ] by SMART

Other resources with information on 2VWO

Community annotation for 2VWO at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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