2W17 Transferase date Oct 15, 2008
title Cdk2 In Complex With The Imidazole Pyrimidine Amide, Compoun
authors C.D.Jones, D.M.Andrews, A.J.Barker, K.Blades, P.Daunt, S.East, C.G M.A.Graham, K.M.Johnson, S.A.Loddick, H.M.Mcfarland, A.Mcgregor D.A.Rudge, P.B.Simpson, M.L.Swain, K.Y.Tam, J.A.Tucker, M.Walker C.Brassington, H.Haye, E.Mccall
compound source
Molecule: Cell Division Protein Kinase 2
Chain: A
Synonym: Cyclin Dependent Kinase 2, P33 Protein Kinase
Ec: 2.7.11.22
Engineered: Yes
Other_details: Acetylation At N-Terminal Methionine
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_cell_line: Sf21
Expression_system_vector_type: Baculovirus
symmetry Space Group: P 21 21 21
R_factor 0.242 R_Free 0.300
crystal
cell
length a length b length c angle alpha angle beta angle gamma
53.542 71.824 71.771 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.15 Å
ligand ACE, ACT, I19 BindingDB enzyme Transferase E.C.2.7.11.22 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe discovery of AZD5597, a potent imidazole pyrimidine amide CDK inhibitor suitable for intravenous dosing., Jones CD, Andrews DM, Barker AJ, Blades K, Daunt P, East S, Geh C, Graham MA, Johnson KM, Loddick SA, McFarland HM, McGregor A, Moss L, Rudge DA, Simpson PB, Swain ML, Tam KY, Tucker JA, Walker M, Bioorg Med Chem Lett. 2008 Dec 15;18(24):6369-73. Epub 2008 Oct 25. PMID:18996007
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk]
  • Biological Unit Coordinates (2w17.pdb1.gz) 49 Kb
  • LPC: Ligand-Protein Contacts for 2W17
  • CSU: Contacts of Structural Units for 2W17
  • Likely Quarternary Molecular Structure file(s) for 2W17
  • Structure Factors (132 Kb)
  • Retrieve 2W17 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2W17 from S2C, [Save to disk]
  • Re-refined 2w17 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2W17 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2W17
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2W17, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2w17_] [2w17_A] [2w17]
  • SWISS-PROT database: [P24941]
  • Domain organization of [CDK2_HUMAN] by SWISSPFAM
  • Domain found in 2W17: [S_TKc ] by SMART
  • Other resources with information on 2W17
  • Community annotation for 2W17 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science