2W22 Hydrolase date Oct 23, 2008
title Activation Mechanism Of Bacterial Thermoalkalophilic Lipases
authors C.Carrasco-Lopez, C.Godoy, B.De Las Rivas, G.Fernandez-Lorente, J.M.Palomo, J.M.Guisan, R.Fernandez-Lafuente, J.A.Hermoso
compound source
Molecule: Triacylglycerol Lipase
Chain: A
Fragment: Residues 30-417
Ec: 3.1.1.3
Engineered: Yes
Organism_scientific: Geobacillus Thermocatenulatus
Organism_taxid: 33938
Strain: Dsm 730
Expression_system: Escherichia Coli Dh5[Alpha]
Expression_system_taxid: 668369
Expression_system_plasmid: Pt1
Other_details: German Collection Of Microorganism (Dsm) In Braunschweig
symmetry Space Group: I 2 2 2
R_factor 0.182 R_Free 0.226
crystal
cell
length a length b length c angle alpha angle beta angle gamma
73.070 128.080 127.490 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand CA, EGC, MPD, ZN enzyme Hydrolase E.C.3.1.1.3 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceActivation of bacterial thermoalkalophilic lipases is spurred by dramatic structural rearrangements., Carrasco-Lopez C, Godoy C, de Las Rivas B, Fernandez-Lorente G, Palomo JM, Guisan JM, Fernandez-Lafuente R, Martinez-Ripoll M, Hermoso JA, J Biol Chem. 2008 Dec 3. PMID:19056729
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (78 Kb) [Save to disk]
  • Biological Unit Coordinates (2w22.pdb1.gz) 73 Kb
  • LPC: Ligand-Protein Contacts for 2W22
  • CSU: Contacts of Structural Units for 2W22
  • Likely Quarternary Molecular Structure file(s) for 2W22
  • Structure Factors (1895 Kb)
  • Retrieve 2W22 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2W22 from S2C, [Save to disk]
  • Re-refined 2w22 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2W22 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2W22
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2W22, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2w22_A] [2w22]
  • SWISS-PROT database: [Q59260]
  • Domain organization of [Q59260_9BACI] by SWISSPFAM
  • Other resources with information on 2W22
  • Community annotation for 2W22 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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