2W2V Signaling Protein date Nov 04, 2008
title Rac2 (G12v) In Complex With Gtpgs
authors O.Opaleye, T.D.Bunney, S.M.Roe, L.H.Pearl
compound source
Molecule: Ras-Related C3 Botulinum Toxin Substrate 2
Chain: A, B, C, D
Fragment: Residues 1-177
Synonym: Rac2, P21-Rac2, Small G Protein, Gx
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
symmetry Space Group: P 1 21 1
R_factor 0.280 R_Free 0.345
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.202 94.529 107.237 90.00 89.99 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand GTP enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • protein kinase regulator act...


    • Primary referenceStructural insights into formation of an active signaling complex between Rac and phospholipase C gamma 2., Bunney TD, Opaleye O, Roe SM, Vatter P, Baxendale RW, Walliser C, Everett KL, Josephs MB, Christow C, Rodrigues-Lima F, Gierschik P, Pearl LH, Katan M, Mol Cell. 2009 Apr 24;34(2):223-33. PMID:19394299
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (124 Kb) [Save to disk]
  • Biological Unit Coordinates (2w2v.pdb1.gz) 33 Kb
  • Biological Unit Coordinates (2w2v.pdb2.gz) 31 Kb
  • Biological Unit Coordinates (2w2v.pdb3.gz) 30 Kb
  • Biological Unit Coordinates (2w2v.pdb4.gz) 32 Kb
  • LPC: Ligand-Protein Contacts for 2W2V
  • CSU: Contacts of Structural Units for 2W2V
  • Likely Quarternary Molecular Structure file(s) for 2W2V
  • Structure Factors (888 Kb)
  • Retrieve 2W2V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2W2V from S2C, [Save to disk]
  • Re-refined 2w2v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2W2V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2W2V
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2W2V, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2w2v] [2w2v_D] [2w2v_C] [2w2v_B] [2w2v_A]
  • SWISS-PROT database: [P15153]
  • Domain organization of [RAC2_HUMAN] by SWISSPFAM
  • Domain found in 2W2V: [RHO ] by SMART
    • Other resources with information on 2W2V
  • Community annotation for 2W2V at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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