2W40	Transferase	date	Nov 18, 2008
title	Crystal Structure Of Plasmodium Falciparum Glycerol Kinase W Glycerol
authors	C.Schnick, S.D.Polley, Q.L.Fivelman, L.Ranford-Cartwright, S.R.W J.A.Brannigan, A.J.Wilkinson, D.A.Baker
compound		source
Molecule: Glycerol Kinase, Putative Chain: A, B, C, D Ec: 2.7.1.30 Engineered: Yes		Organism_scientific: Plasmodium Falciparum Organism_taxid: 36329 Strain: 3d7 Expression_system: Escherichia Coli Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_plasmid: Pmal-C2x
symmetry	Space Group: P 1 21 1	R_factor 0.168 R_Free 0.210
crystal cell	length a length b length c angle alpha angle beta angle gamma 101.915 100.717 107.812 90.00 92.56 90.00
method	X-Ray Diffraction	resolution	1.49 Å
ligand	EDO, GOL	enzyme	Transferase E.C.2.7.1.30 BRENDA
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Structure and non-essential function of glycerol kinase in Plasmodium falciparum blood stages., Schnick C, Polley SD, Fivelman QL, Ranford-Cartwright LC, Wilkinson SR, Brannigan JA, Wilkinson AJ, Baker DA, Mol Microbiol. 2008 Nov 24. PMID:19040641

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (683 Kb) [Save to disk] Biological Unit Coordinates (2w40.pdb1.gz) 342 Kb Biological Unit Coordinates (2w40.pdb2.gz) 339 Kb LPC: Ligand-Protein Contacts for 2W40 CSU: Contacts of Structural Units for 2W40 Likely Quarternary Molecular Structure file(s) for 2W40 Structure Factors (3557 Kb) Retrieve 2W40 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2W40 from S2C, [Save to disk] Re-refined 2w40 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2W40 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2W40

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2W40, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2w40_C] [2w40] [2w40_A] [2w40_D] [2w40_B] SWISS-PROT database: [Q8IDI4] Domain organization of [Q8IDI4_PLAF7] by SWISSPFAM

Other resources with information on 2W40

Community annotation for 2W40 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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