2W4J Transferase date Nov 27, 2008
title X-Ray Structure Of A Dap-Kinase 2-277
authors I.De Diego, J.Kuper, F.Lehmann, M.Wilmanns
compound source
Molecule: Death-Associated Protein Kinase 1
Chain: A
Fragment: Catalytic Domain, Residues 1-277
Synonym: Death Associated Protein Kinase I Dapk, Dap Kinase
Ec: 2.7.11.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_plasmid: Petm11
symmetry Space Group: P 21 21 21
R_factor 0.131 R_Free 0.159
crystal
cell
length a length b length c angle alpha angle beta angle gamma
46.844 62.336 88.345 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.30 Å
ligand ACT, ADP, MG enzyme Transferase E.C.2.7.11.1 BRENDA
note 2W4J is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (111 Kb) [Save to disk]
  • Biological Unit Coordinates (2w4j.pdb1.gz) 105 Kb
  • LPC: Ligand-Protein Contacts for 2W4J
  • CSU: Contacts of Structural Units for 2W4J
  • Structure Factors (899 Kb)
  • Retrieve 2W4J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2W4J from S2C, [Save to disk]
  • Re-refined 2w4j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2W4J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2W4J
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2W4J, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2w4j_A] [2w4j]
  • SWISS-PROT database: [P53355]
  • Domain organization of [DAPK1_HUMAN] by SWISSPFAM
  • Domain found in 2W4J: [S_TKc ] by SMART
  • Other resources with information on 2W4J
  • Community annotation for 2W4J at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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