2W5J Hydrolase date Dec 10, 2008
title Structure Of The C14-Rotor Ring Of The Proton Translocating Chloroplast Atp Synthase
authors M.Vollmar, D.Schlieper, M.Winn, C.Buechner, G.Groth
compound source
Molecule: Atp Synthase C Chain, Chloroplastic
Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, V
Fragment: Residues 2-79
Synonym: Lipid-Binding Protein, Atpase Subunit III, C14 Rot Chloroplast Atp Synthase;
Ec: 3.6.3.14
Organism_scientific: Spinacia Oleracea
Organism_common: Spinach
Organism_taxid: 3562
Variant: Polka
Organ: Thylakoid Membrane
symmetry Space Group: C 1 2 1
R_factor 0.317 R_Free 0.335
crystal
cell
length a length b length c angle alpha angle beta angle gamma
128.601 89.996 124.893 90.00 104.70 90.00
method X-Ray Diffractionresolution 3.80 Å
ligand
enzyme Hydrolase E.C.3.6.3.14 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, K, E, B, V, H, M, C, D, I, G, L


Primary referenceStructure of the C14-rotor ring of the proton translocating chloroplast ATP synthase., Vollmar M, Schlieper D, Winn M, Buchner C, Groth G, J Biol Chem. 2009 May 7. PMID:19423706
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (136 Kb) [Save to disk]
  • Biological Unit Coordinates (2w5j.pdb1.gz) 130 Kb
  • CSU: Contacts of Structural Units for 2W5J
  • Likely Quarternary Molecular Structure file(s) for 2W5J
  • Structure Factors (175 Kb)
  • Retrieve 2W5J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2W5J from S2C, [Save to disk]
  • Re-refined 2w5j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2W5J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2W5J
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2W5J, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2w5j_H] [2w5j_M] [2w5j_J] [2w5j_C] [2w5j_B] [2w5j_G] [2w5j_E] [2w5j_F] [2w5j_A] [2w5j] [2w5j_I] [2w5j_V] [2w5j_D] [2w5j_K] [2w5j_L]
  • SWISS-PROT database: [P69447]
  • Domain organization of [ATPH_SPIOL] by SWISSPFAM
  • Other resources with information on 2W5J
  • Community annotation for 2W5J at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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