2W5L Hydrolase date Dec 10, 2008
title Rnase A-Nadp Complex
authors G.B.Chavali, D.E.Holloway, M.D.Baker, K.R.Acharya
compound source
Molecule: Ribonuclease Pancreatic
Chain: A, B
Synonym: Rnase 1, Rnase A, Ribonuclease A
Ec: 3.1.27.5
 Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Organ: Pancreas
Other_details: Sigma Chemical Co.
symmetry Space Group: C 1 2 1
R_factor 0.183 R_Free 0.227
crystal
cell
length a length b length c angle alpha angle beta angle gamma
102.890 33.699 74.252 90.00 89.97 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand NAP enzyme Hydrolase E.C.3.1.27.5 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • ribonuclease A activity


    • Primary referenceInfluence of naturally-occurring 5'-pyrophosphate-linked substituents on the binding of adenylic inhibitors to ribonuclease A: An X-ray crystallographic study., Holloway DE, Chavali GB, Leonidas DD, Baker MD, Acharya KR, Biopolymers. 2009 Feb 3. PMID:19191310
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk]
  • Biological Unit Coordinates (2w5l.pdb1.gz) 22 Kb
  • Biological Unit Coordinates (2w5l.pdb2.gz) 22 Kb
  • LPC: Ligand-Protein Contacts for 2W5L
  • CSU: Contacts of Structural Units for 2W5L
  • Likely Quarternary Molecular Structure file(s) for 2W5L
  • Structure Factors (444 Kb)
  • Retrieve 2W5L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2W5L from S2C, [Save to disk]
  • Re-refined 2w5l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2W5L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2W5L
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2W5L, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2w5l_A] [2w5l] [2w5l_B]
  • SWISS-PROT database: [P61823]
  • Domain organization of [RNAS1_BOVIN] by SWISSPFAM
  • Domain found in 2W5L: [RNAse_Pc ] by SMART
    • Other resources with information on 2W5L
  • Community annotation for 2W5L at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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