2W6D Hydrolase date Dec 18, 2008
title Bacterial Dynamin-Like Protein Lipid Tube Bound
authors H.H.Low, C.Sachse, L.A.Amos, J.Lowe
compound source
Molecule: Dynamin Family Protein
Chain: A, B
Synonym: Bacterial Dynamin-Like Protein Bdlp
Engineered: Yes
 Organism_scientific: Nostoc Punctiforme
Organism_taxid: 63737
Atcc: 29133
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 9.00 Å
ligand CPL, GDP enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure of a bacterial dynamin-like protein lipid tube provides a mechanism for assembly and membrane curving., Low HH, Sachse C, Amos LA, Lowe J, Cell. 2009 Dec 24;139(7):1342-52. PMID:20064379
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (284 Kb) [Save to disk]
  • Biological Unit Coordinates (2w6d.pdb1.gz) 264 Kb
  • LPC: Ligand-Protein Contacts for 2W6D
  • CSU: Contacts of Structural Units for 2W6D
  • Retrieve 2W6D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2W6D from S2C, [Save to disk]
    • View 2W6D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2W6D
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2W6D, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2w6d_B] [2w6d] [2w6d_A]
  • SWISS-PROT database: [B2IZD3]
  • Domain organization of [B2IZD3_NOSP7] by SWISSPFAM
    • Other resources with information on 2W6D
  • Community annotation for 2W6D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science