2W6H Hydrolase date Dec 18, 2008
title Low Resolution Structures Of Bovine Mitochondrial F1-Atpase Controlled Dehydration: Hydration State 4a.
authors J.Sanchez-Weatherby, F.Felisaz, A.Gobbo, J.Huet, R.B.G.Ravelli, M.W.Bowler, F.Cipriani
compound source
Molecule: Atp Synthase Subunit Alpha Heart Isoform, Mitocho
Chain: A, B, C
Synonym: F1-Atpase Alpha Subunit
Ec: 3.6.3.14
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Organ: Heart
Tissue: Muscle
Organelle: Mitochondria

Molecule: Atp Synthase Subunit Beta, Mitochondrial
Chain: D, E, F
Synonym: F1-Atpase Beta Subunit
Ec: 3.6.3.14

Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Organ: Heart
Tissue: Muscle
Organelle: Mitochonria

Molecule: Atp Synthase Subunit Gamma, Mitochondrial
Chain: G
Synonym: F1-Atpase Gamma Subunit
Ec: 3.6.3.14

Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Organ: Heart
Tissue: Muscle
Organelle: Mitochonria

Molecule: Atp Synthase Subunit Delta, Mitochondrial
Chain: H
Synonym: F1-Atpase Delta Subunit
Ec: 3.6.3.14

Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Organ: Heart
Tissue: Muscle
Organelle: Mitochonria

Molecule: Atp Synthase Subunit Epsilon, Mitochondrial
Chain: I
Synonym: F1-Atpase Epsilon Subunit
Ec: 3.6.3.14

Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Organ: Heart
Tissue: Muscle
Organelle: Mitochonria
symmetry Space Group: P 21 21 21
R_factor 0.296 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
107.900 140.240 268.660 90.00 90.00 90.00
method X-Ray Diffractionresolution 5.00 Å
ligand
enzyme Hydrolase E.C.3.6.3.14 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B, C


F, E, D


G


H


I


Primary referenceImproving diffraction by humidity control: a novel device compatible with X-ray beamlines., Sanchez-Weatherby J, Bowler MW, Huet J, Gobbo A, Felisaz F, Lavault B, Moya R, Kadlec J, Ravelli RB, Cipriani F, Acta Crystallogr D Biol Crystallogr. 2009 Dec;65(Pt 12):1237-46. Epub 2009, Nov 17. PMID:19966409
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (440 Kb) [Save to disk]
  • Biological Unit Coordinates (2w6h.pdb1.gz) 431 Kb
  • CSU: Contacts of Structural Units for 2W6H
  • Structure Factors (1069 Kb)
  • Retrieve 2W6H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2W6H from S2C, [Save to disk]
  • Re-refined 2w6h structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2W6H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2W6H
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2W6H, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2w6h_I] [2w6h] [2w6h_E] [2w6h_C] [2w6h_B] [2w6h_A] [2w6h_D] [2w6h_G] [2w6h_H] [2w6h_F]
  • SWISS-PROT database: [P05632] [P19483] [P00829] [P05630] [P05631]
  • Domain organization of [ATP5E_BOVIN] [ATPA_BOVIN] [ATPB_BOVIN] [ATPD_BOVIN] [ATPG_BOVIN] by SWISSPFAM
  • Domain found in 2W6H: [AAA ] by SMART
  • Other resources with information on 2W6H
  • Community annotation for 2W6H at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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