2W83 Protein Transport date Jan 08, 2009
title Crystal Structure Of The Arf6 Gtpase In Complex With A Speci Effector, Jip4
authors T.Isabet, G.Montagnac, K.Regazzoni, B.Raynal, F.El Khadali, M.Fra P.England, P.Chavrier, A.Houdusse, J.Menetrey
compound source
Molecule: Adp-Ribosylation Factor 6
Chain: A, B, E
Fragment: G Domain, Residues 13-175
Synonym: Arf6
Engineered: Yes
Mutation: Yes
Other_details: 12 Residues N-Terminal Deletion
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: C-Jun-Amino-Terminal Kinase-Interacting Protein 4
Chain: C, D
Fragment: Leucine Zipper II, Residues 392-462
Synonym: Jip4, Jnk-Interacting Protein 4, Jip-4, Jlp, Hlc-6 Ct89, Jnk-Associated Leucine-Zipper Protein, Sperm-Associat 9, Mitogen-Activated Protein Kinase 8-Interacting Protein 4 Lung Cancer Oncogene 6 Protein, Proliferation-Inducing Prot Sperm-Specific Protein, Sperm Surface Protein, Protein High Expressed In Testis, Sunday Driver 1, Cancertestis Antigen
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector: Pgst
symmetry Space Group: P 62 2 2
R_factor 0.214 R_Free 0.238
crystal
cell
length a length b length c angle alpha angle beta angle gamma
137.270 137.270 165.030 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.93 Å
ligand DIO, GOL, GTP, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, E, B
  • synaptic vesicle endocytosis...

  • D, C


    Primary referenceThe structural basis of Arf effector specificity: the crystal structure of ARF6 in a complex with JIP4., Isabet T, Montagnac G, Regazzoni K, Raynal B, Khadali FE, England P, Franco M, Chavrier P, Houdusse A, Menetrey J, EMBO J. 2009 Jul 30. PMID:19644450
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (114 Kb) [Save to disk]
  • Biological Unit Coordinates (2w83.pdb1.gz) 107 Kb
  • LPC: Ligand-Protein Contacts for 2W83
  • CSU: Contacts of Structural Units for 2W83
  • Likely Quarternary Molecular Structure file(s) for 2W83
  • Structure Factors (3571 Kb)
  • Retrieve 2W83 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2W83 from S2C, [Save to disk]
  • Re-refined 2w83 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2W83 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2W83
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2W83, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2w83_A] [2w83_E] [2w83_D] [2w83] [2w83_C] [2w83_B]
  • SWISS-PROT database: [P62330] [O60271]
  • Domain organization of [ARF6_HUMAN] [JIP4_HUMAN] by SWISSPFAM
  • Domain found in 2W83: [ARF ] by SMART
  • Other resources with information on 2W83
  • Community annotation for 2W83 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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