2W8Y Receptor date Jan 20, 2009
title Ru486 Bound To The Progesterone Receptor In A Destabilized A Conformation
authors H.C.A.Raaijmakers, J.Versteeg, J.C.M.Uitdehaag
compound source
Molecule: Progesterone Receptor
Chain: A, B
Fragment: Pr Lbd, Residues 678-933
Synonym: Pr, Nuclear Receptor Subfamily 3 Group C Member 3
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.185 R_Free 0.218
crystal
cell
length a length b length c angle alpha angle beta angle gamma
58.164 63.897 70.051 90.00 95.57 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand 486, EDO, NDR, SO4 BindingDB enzyme
Primary referenceThe X-ray structure of RU486 bound to the progesterone receptor in a destabilized agonistic conformation., Raaijmakers HC, Versteegh JE, Uitdehaag JC, J Biol Chem. 2009 Apr 16. PMID:19372222
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk]
  • Biological Unit Coordinates (2w8y.pdb1.gz) 45 Kb
  • Biological Unit Coordinates (2w8y.pdb2.gz) 44 Kb
  • LPC: Ligand-Protein Contacts for 2W8Y
  • CSU: Contacts of Structural Units for 2W8Y
  • Likely Quarternary Molecular Structure file(s) for 2W8Y
  • Structure Factors (335 Kb)
  • Retrieve 2W8Y in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2W8Y from S2C, [Save to disk]
  • Re-refined 2w8y structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2W8Y in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2W8Y
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2W8Y, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2w8y_B] [2w8y] [2w8y_A]
  • SWISS-PROT database: [P06401]
  • Domain organization of [PRGR_HUMAN] by SWISSPFAM
  • Domain found in 2W8Y: [HOLI ] by SMART
  • Other resources with information on 2W8Y
  • Community annotation for 2W8Y at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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