2WAA Hydrolase date Feb 04, 2009
title Structure Of A Family Two Carbohydrate Esterase From Cellvibrio Japonicus
authors C.Montainer, V.A.Money, V.M.R.Pires, J.E.Flint, B.A.Pinheiro, A.Goyal, J.A.M.Prates, A.Izumi, H.Stalbrand, K.Kolenova, E.Topakas, E.J.Dodson, D.N.Bolam, G.J.Davies, C.M.G.A.Fontes, H.J.Gilbert
compound source
Molecule: Xylan Esterase, Putative, Axe2c
Chain: A
Fragment: Residues 21-358
Synonym: Acetyl Esterase
Ec: 3.1.1.72
Engineered: Yes
Organism_scientific: Cellvibrio Japonicus
Organism_taxid: 155077
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_plasmid: Pet22b
symmetry Space Group: P 41 21 2
R_factor 0.155 R_Free 0.184
crystal
cell
length a length b length c angle alpha angle beta angle gamma
132.163 132.163 45.790 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand ACT, GOL enzyme Hydrolase E.C.3.1.1.72 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe active site of a carbohydrate esterase displays divergent catalytic and noncatalytic binding functions., Montanier C, Money VA, Pires VM, Flint JE, Pinheiro BA, Goyal A, Prates JA, Izumi A, Stalbrand H, Morland C, Cartmell A, Kolenova K, Topakas E, Dodson EJ, Bolam DN, Davies GJ, Fontes CM, Gilbert HJ, PLoS Biol. 2009 Mar 31;7(3):e71. PMID:19338387
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (71 Kb) [Save to disk]
  • Biological Unit Coordinates (2waa.pdb1.gz) 66 Kb
  • LPC: Ligand-Protein Contacts for 2WAA
  • CSU: Contacts of Structural Units for 2WAA
  • Likely Quarternary Molecular Structure file(s) for 2WAA
  • Structure Factors (518 Kb)
  • Retrieve 2WAA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2WAA from S2C, [Save to disk]
  • Re-refined 2waa structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2WAA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2WAA
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2WAA, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2waa_A] [2waa]
  • SWISS-PROT database: [B3PIB0]
  • Domain organization of [B3PIB0_CELJU] by SWISSPFAM
  • Other resources with information on 2WAA
  • Community annotation for 2WAA at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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