2WBE Structural Protein date Feb 26, 2009
title Kinesin-5-Tubulin Complex With Amppnp
authors A.J.Bodey, M.Kikkawa, C.A.Moores
compound source
Molecule: Tubulin Alpha-1d Chain
Chain: A
Synonym: Alpha-Beta-Tubulin, Tuba1d
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Organ: Brain

Molecule: Tubulin Beta-2b Chain
Chain: B
Synonym: Alpha-Beta-Tubulin, Tubb2b

Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Organ: Brain

Molecule: Bipolar Kinesin Krp-130
Chain: C
Fragment: Motor Domain With Neck Linker, Residues 1-368
Synonym: Klp61f, Kinesin-Like Protein Klp61f, Klp2
Engineered: Yes

Organism_scientific: Drosophila Melanogaster
Organism_common: Fruit Fly
Organism_taxid: 7227
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-15b-Tev
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 9.40 Å
ligand ANP, GDP, GTP, MG, TA1 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B


C


Primary referenceNine-Angstrom Structure of a Microtubule-Bound Mitotic Motor., Bodey AJ, Kikkawa M, Moores CA, J Mol Biol. 2009 Mar 10. PMID:19285086
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (193 Kb) [Save to disk]
  • Biological Unit Coordinates (2wbe.pdb1.gz) 70 Kb
  • Biological Unit Coordinates (2wbe.pdb2.gz) 73 Kb
  • Biological Unit Coordinates (2wbe.pdb3.gz) 53 Kb
  • LPC: Ligand-Protein Contacts for 2WBE
  • CSU: Contacts of Structural Units for 2WBE
  • Likely Quarternary Molecular Structure file(s) for 2WBE
  • Retrieve 2WBE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2WBE from S2C, [Save to disk]
  • View 2WBE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2WBE
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2WBE, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2wbe] [2wbe_A] [2wbe_B] [2wbe_C]
  • SWISS-PROT database: [P46863] [P02550] [P02554]
  • Domain organization of [KL61_DROME] [TBA1A_PIG] [TBB_PIG] by SWISSPFAM
  • Domains found in 2WBE: [KISc] [Tubulin] [Tubulin_C ] by SMART
  • Other resources with information on 2WBE
  • Community annotation for 2WBE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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