2WD2 Lyase date Mar 19, 2009
title A Chimeric Microtubule Disruptor With Efficacy On A Taxane R Cell Line
authors M.P.Leese, F.L.Jourdan, M.R.Kimberley, G.E.Cozier, S.Regis-Lydi, P.A.Foster, S.P.Newman, N.Thiyagarajan, K.R.Acharya, E.Ferrandi A.Purohit, M.J.Reed, B.V.L.Potter
compound source
Molecule: Carbonic Anhydrase 2
Chain: A
Fragment: Residues 2-260
Synonym: Carbonate Dehydratase II, Carbonic Anhydrase C, Ca Caccarbonic Anhydrase II;
Ec: 4.2.1.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Paca
symmetry Space Group: P 21 21 21
R_factor 0.205 R_Free 0.227
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.067 71.708 74.136 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.49 Å
ligand FMT, MS5, ZN enzyme Lyase E.C.4.2.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceChimeric microtubule disruptors., Leese MP, Jourdan F, Kimberley MR, Cozier GE, Thiyagarajan N, Stengel C, Regis-Lydi S, Foster PA, Newman SP, Acharya KR, Ferrandis E, Purohit A, Reed MJ, Potter BV, Chem Commun (Camb). 2010 May 7;46(17):2907-9. Epub 2010 Mar 20. PMID:20386818
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk]
  • Biological Unit Coordinates (2wd2.pdb1.gz) 46 Kb
  • LPC: Ligand-Protein Contacts for 2WD2
  • CSU: Contacts of Structural Units for 2WD2
  • Structure Factors (452 Kb)
  • Retrieve 2WD2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2WD2 from S2C, [Save to disk]
  • Re-refined 2wd2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2WD2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2WD2
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2WD2, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2wd2] [2wd2_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2WD2: [Carb_anhydrase ] by SMART
  • Other resources with information on 2WD2
  • Community annotation for 2WD2 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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