2WIH Transferase date May 13, 2009
title Structure Of Cdk2-Cyclin A With Pha-848125
authors M.G.Brasca, N.Amboldi, D.Ballinari, A.D.Cameron, E.Casale, G.Cerv M.Colombo, F.Colotta, V.Croci, R.Dalessio, F.Fiorentini, A.Isacc C.Mercurio, W.Moretti, A.Panzeri, W.Pastori, P.Pevarello, F.Quar F.Roletto, G.Traquandi, P.Vianello, A.Vulpetti, M.Ciomei
compound source
Molecule: Cell Division Protein Kinase 2
Chain: A, C
Synonym: P33 Protein Kinase
Ec: 2.7.1.37
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111
Expression_system_cell_line: High Five
Expression_system_vector_type: Baculovirus

Molecule: Cyclin-A2
Chain: B, D
Fragment: C-Terminal Portion, Residues 173-432
Synonym: Cyclin A, Cyclin A2
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_plasmid: Pgex6p
symmetry Space Group: P 62 2 2
R_factor 0.213 R_Free 0.250
crystal
cell
length a length b length c angle alpha angle beta angle gamma
183.000 183.000 213.560 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.50 Å
ligand P48, SO4 BindingDB enzyme Transferase E.C.2.7.1.37 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C


Primary referenceIdentification of N,1,4,4-Tetramethyl-8-{[4-(4-methylpiperazin-1-yl)phenyl]amino}-4,5-dihydr o-1H-pyrazolo[4,3-h]quinazoline-3-carboxamide (PHA-848125), a Potent, Orally Available Cyclin Dependent Kinase Inhibitor., Brasca MG, Amboldi N, Ballinari D, Cameron A, Casale E, Cervi G, Colombo M, Colotta F, Croci V, D'Alessio R, Fiorentini F, Isacchi A, Mercurio C, Moretti W, Panzeri A, Pastori W, Pevarello P, Quartieri F, Roletto F, Traquandi G, Vianello P, Vulpetti A, Ciomei M, J Med Chem. 2009 Jul 15. PMID:19603809
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (197 Kb) [Save to disk]
  • Biological Unit Coordinates (2wih.pdb1.gz) 96 Kb
  • Biological Unit Coordinates (2wih.pdb2.gz) 95 Kb
  • LPC: Ligand-Protein Contacts for 2WIH
  • CSU: Contacts of Structural Units for 2WIH
  • Likely Quarternary Molecular Structure file(s) for 2WIH
  • Structure Factors (567 Kb)
  • Retrieve 2WIH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2WIH from S2C, [Save to disk]
  • Re-refined 2wih structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2WIH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2WIH
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2WIH, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2wih_D] [2wih_C] [2wih_A] [2wih_B] [2wih]
  • SWISS-PROT database: [P20248] [P24941]
  • Domain organization of [CCNA2_HUMAN] [CDK2_HUMAN] by SWISSPFAM
  • Domains found in 2WIH: [CYCLIN] [Cyclin_C] [S_TKc ] by SMART
  • Other resources with information on 2WIH
  • Community annotation for 2WIH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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