2WJP	Ligase	date	May 28, 2009
title	Crystal Structure Of Murd Ligase In Complex With D-Glu Conta Rhodanine Inhibitor
authors	T.Tomasic, N.Zidar, R.Sink, A.Kovac, V.Rupnik, S.Turk, C.Contreras A.Dessen, D.Blanot, M.Muller-Premru, S.Gobec, A.Zega, L.Peterlin D.Kikelj
compound		source
Molecule: Udp-N-Acetylmuramoylalanine--D-Glutamate Ligase Chain: A Fragment: Residues 2-438 Synonym: Udp-N-Acetylmuramoyl-L-Alanyl-D-Glutamate Syntheta Glutamic Acid-Adding Enzyme, Murd Ligase; Ec: 6.3.2.9 Engineered: Yes		Organism_scientific: Escherichia Coli Dh5[Alpha] Organism_taxid: 668369 Expression_system: Escherichia Coli Dh5[Alpha] Expression_system_taxid: 668369 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pabd16murd
symmetry	Space Group: P 41	R_factor 0.166 R_Free 0.189
crystal cell	length a length b length c angle alpha angle beta angle gamma 65.917 65.917 136.063 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.60 Å
ligand	AZI, CL, D17, DMS, KCX, SO4	enzyme	Ligase E.C.6.3.2.9 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Discovery of Novel 5-Benzylidenerhodanine and 5-Benzylidenethiazolidine-2,4-dione Inhibitors of MurD Ligase., Zidar N, Tomasic T, Sink R, Rupnik V, Kovac A, Turk S, Patin D, Blanot D, Contreras Martel C, Dessen A, Muller Premru M, Zega A, Gobec S, Peterlin Masic L, Kikelj D, J Med Chem. 2010 Aug 30. PMID:20804196

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (153 Kb) [Save to disk] Biological Unit Coordinates (2wjp.pdb1.gz) 146 Kb LPC: Ligand-Protein Contacts for 2WJP CSU: Contacts of Structural Units for 2WJP Structure Factors (546 Kb) Retrieve 2WJP in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2WJP from S2C, [Save to disk] Re-refined 2wjp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2WJP in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2WJP

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2WJP, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2wjp] [2wjp_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 2WJP

Community annotation for 2WJP at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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