2WKP Transferase, Cell Adhesion date Jun 16, 2009
title Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtyp
authors Y.I.Wu, D.Frey, O.I.Lungu, A.Jaehrig, I.Schlichting, B.Kuhlman, K.
compound source
Molecule: Nph1-1, Ras-Related C3 Botulinum Toxin Substrate
Chain: A
Fragment: Nph1-1, Residues 404-546 And P21-Rac1, Residues 4
Synonym: Rac1_human, P21-Rac1, Ras-Like Protein Tc25, Cell Inducing Gene 5 Protein;
Engineered: Yes
Mutation: Yes
Organism_scientific: Avena Sativa, Homo Sapiens
Organism_common: Oat, Human
Organism_taxid: 4498, 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Xl10 Gold
Expression_system_plasmid: Pqe30
symmetry Space Group: P 32 2 1
R_factor 0.166 R_Free 0.195
crystal
cell
length a length b length c angle alpha angle beta angle gamma
113.880 113.880 69.520 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.90 Å
ligand CA, FMN, GTP, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceA genetically encoded photoactivatable Rac controls the motility of living cells., Wu YI, Frey D, Lungu OI, Jaehrig A, Schlichting I, Kuhlman B, Hahn KM, Nature. 2009 Aug 19. PMID:19693014
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (67 Kb) [Save to disk]
  • Biological Unit Coordinates (2wkp.pdb1.gz) 61 Kb
  • LPC: Ligand-Protein Contacts for 2WKP
  • CSU: Contacts of Structural Units for 2WKP
  • Structure Factors (553 Kb)
  • Retrieve 2WKP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2WKP from S2C, [Save to disk]
  • Re-refined 2wkp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2WKP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2WKP
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2WKP, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2wkp_A] [2wkp]
  • SWISS-PROT database: [O49003] [P63000]
  • Domain organization of [O49003_AVESA] [RAC1_HUMAN] by SWISSPFAM
  • Domains found in 2WKP: [PAC] [PAS] [RHO ] by SMART
  • Other resources with information on 2WKP
  • Community annotation for 2WKP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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