2WMA Cell Cycle date Jun 30, 2009
title Structural And Thermodynamic Consequences Of Cyclization Of Ligands For The Recruitment Site Of Cyclin A
authors G.F.Robertson, J.A.Endicott, M.E.M.Noble, J.M.Mcdonnell
compound source
Molecule: Cell Division Protein Kinase 2
Chain: A, C
Synonym: Cdk2, P33 Protein Kinase
Ec: 2.7.11.22
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: B834
Expression_system_plasmid: Pgex-6-P1

Molecule: Cyclin-A2
Chain: B, D
Fragment: Residues 174-432
Synonym: Cyclin-A
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_plasmid: Pet21d

Molecule: Cyclic Rklfn-Nh2
Chain: E
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
symmetry Space Group: P 21 21 21
R_factor 0.211 R_Free 0.285
crystal
cell
length a length b length c angle alpha angle beta angle gamma
72.792 131.853 146.883 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand TPO enzyme Transferase E.C.2.7.11.22 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (183 Kb) [Save to disk]
  • Biological Unit Coordinates (2wma.pdb1.gz) 92 Kb
  • Biological Unit Coordinates (2wma.pdb2.gz) 85 Kb
  • LPC: Ligand-Protein Contacts for 2WMA
  • CSU: Contacts of Structural Units for 2WMA
  • Structure Factors (279 Kb)
  • Retrieve 2WMA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2WMA from S2C, [Save to disk]
  • Re-refined 2wma structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2WMA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2WMA
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2WMA, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2wma_D] [2wma_B] [2wma_E] [2wma] [2wma_A] [2wma_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 2WMA: [CYCLIN] [Cyclin_C] [S_TKc ] by SMART
  • Other resources with information on 2WMA
  • Community annotation for 2WMA at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science