2WMH Hydrolase date Jun 30, 2009
title Crystal Structure Of The Catalytic Module Of A Family 98 Gly Hydrolase From Streptococcus Pneumoniae Tigr4 In Complex Wi Disaccharide Blood Group Antigen.
authors M.A.Higgins, G.E.Whitworth, N.El Warry, M.Randriantsoa, E.Samain R.D.Burke, D.J.Vocadlo, A.B.Boraston
compound source
Molecule: Fucolectin-Related Protein
Chain: A
Fragment: Catalytic Module, Residues 31-589
Synonym: Glycoside Hydrolase
Engineered: Yes
Organism_scientific: Streptococcus Pneumoniae
Organism_taxid: 170187
Strain: Tigr4
Atcc: Baa-334
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21 Star (De3)
Expression_system_plasmid: Pet28a
symmetry Space Group: P 21 21 21
R_factor 0.143 R_Free 0.197
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.796 90.816 116.545 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand FUC, GAL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDifferential recognition and hydrolysis of host carbohydrate-antigens by Streptococcus pneumoniae family 98 glycoside hydrolases., Higgins MA, Whitworth GE, El Warry N, Randriantsoa M, Samain E, Burke RD, Vocadlo DJ, Boraston AB, J Biol Chem. 2009 Jul 16. PMID:19608744
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (202 Kb) [Save to disk]
  • Biological Unit Coordinates (2wmh.pdb1.gz) 196 Kb
  • LPC: Ligand-Protein Contacts for 2WMH
  • CSU: Contacts of Structural Units for 2WMH
  • Likely Quarternary Molecular Structure file(s) for 2WMH
  • Structure Factors (894 Kb)
  • Retrieve 2WMH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2WMH from S2C, [Save to disk]
  • Re-refined 2wmh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2WMH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2WMH
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2WMH, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2wmh_A] [2wmh]
  • SWISS-PROT database: [Q97N96]
  • Domain organization of [Q97N96_STRPN] by SWISSPFAM
  • Other resources with information on 2WMH
  • Community annotation for 2WMH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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