2WMJ	Hydrolase	date	Jun 30, 2009
title	Crystal Structure Of The Catalytic Module Of A Family 98 Gly Hydrolase From Streptococcus Pneumoniae Sp3-Bs71 (Sp3gh98) With The B-Trisaccharide Blood Group Antigen.
authors	M.A.Higgins, G.E.Whitworth, N.El Warry, M.Randriantsoa, E.Samain R.D.Burke, D.J.Vocadlo, A.B.Boraston
compound		source
Molecule: Fucolectin-Related Protein Chain: A, B Fragment: Catalytic Module, Residues 422-1005 Synonym: Glycoside Hydrolase Engineered: Yes		Organism_scientific: Streptococcus Pneumoniae Organism_taxid: 406556 Strain: Sp3-Bs71 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21 Star (De3) Expression_system_plasmid: Pet28a
symmetry	Space Group: P 21 21 2	R_factor 0.161 R_Free 0.211
crystal cell	length a length b length c angle alpha angle beta angle gamma 98.070 154.180 91.150 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	FUC, GAL, GLA	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Differential recognition and hydrolysis of host carbohydrate-antigens by Streptococcus pneumoniae family 98 glycoside hydrolases., Higgins MA, Whitworth GE, El Warry N, Randriantsoa M, Samain E, Burke RD, Vocadlo DJ, Boraston AB, J Biol Chem. 2009 Jul 16. PMID:19608744

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (211 Kb) [Save to disk] Biological Unit Coordinates (2wmj.pdb1.gz) 104 Kb Biological Unit Coordinates (2wmj.pdb2.gz) 105 Kb LPC: Ligand-Protein Contacts for 2WMJ CSU: Contacts of Structural Units for 2WMJ Likely Quarternary Molecular Structure file(s) for 2WMJ Structure Factors (1233 Kb) Retrieve 2WMJ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2WMJ from S2C, [Save to disk] Re-refined 2wmj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2WMJ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2WMJ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2WMJ, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2wmj_A] [2wmj] [2wmj_B] SWISS-PROT database: [A5LBQ0] Domain organization of [A5LBQ0_STRPN] by SWISSPFAM

Other resources with information on 2WMJ

Community annotation for 2WMJ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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