2WMZ Membrane Protein date Jul 03, 2009
title Structure Of A Mutated Tolc
authors P.Hinchliffe, X.Y.Pei, M.F.Symmons, E.Koronakis, C.Hughes, V.Koro
compound source
Molecule: Outer Membrane Protein Tolc
Chain: A, B, C
Fragment: Mature Protein With 43 C-Terminal Residues Remove Residues 23-450;
Synonym: Tolc Outer Membrane Protein
Engineered: Yes
Mutation: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K-12
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl923(De3)
Expression_system_variant: Tolc-
Expression_system_plasmid: Pt7tolc
symmetry Space Group: P 21 21 21
R_factor 0.258 R_Free 0.301
crystal
cell
length a length b length c angle alpha angle beta angle gamma
124.690 135.220 136.470 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand CL, NA, PGE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceStructures of sequential open states in a symmetrical opening transition of the TolC exit duct., Pei XY, Hinchliffe P, Symmons MF, Koronakis E, Benz R, Hughes C, Koronakis V, Proc Natl Acad Sci U S A. 2011 Jan 18. PMID:21245342
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (205 Kb) [Save to disk]
  • Biological Unit Coordinates (2wmz.pdb1.gz) 200 Kb
  • LPC: Ligand-Protein Contacts for 2WMZ
  • CSU: Contacts of Structural Units for 2WMZ
  • Structure Factors (398 Kb)
  • Retrieve 2WMZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2WMZ from S2C, [Save to disk]
  • Re-refined 2wmz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2WMZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2WMZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2WMZ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2wmz_C] [2wmz] [2wmz_A] [2wmz_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2WMZ
  • Community annotation for 2WMZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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