2WO6 Transferase Peptide date Jul 22, 2009
title Human Dual-Specificity Tyrosine-Phosphorylation-Regulated Ki Complex With A Consensus Substrate Peptide
authors A.K.Roos, M.Soundararajan, J.M.Elkins, O.Fedorov, J.Eswaran, C.Ph A.C.W.Pike, E.Ugochukwu, J.R.C.Muniz, N.Burgess-Brown, F.Von De C.H.Arrowsmith, M.Wikstrom, A.Edwards, C.Bountra, S.Knapp
compound source
Molecule: Dual Specificity Tyrosine-Phosphorylation- Regula 1a;
Chain: A, B
Fragment: Residues 127-485
Synonym: Protein Kinase Minibrain Homolog, Hp86, Dual Speci Yak1-Related Kinase, Mnbh, Hmnb;
Ec: 2.7.12.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: R3-Prare2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28-Bsa4

Molecule: Artificial Consensus Sequence
Chain: C
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 65
R_factor 0.188 R_Free 0.229
crystal
cell
length a length b length c angle alpha angle beta angle gamma
168.430 168.430 62.420 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.50 Å
ligand CL, D15, PTR enzyme Transferase E.C.2.7.12.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructures of Down Syndrome Kinases, DYRKs, Reveal Mechanisms of Kinase Activation and Substrate Recognition., Soundararajan M, Roos AK, Savitsky P, Filippakopoulos P, Kettenbach AN, Olsen JV, Gerber SA, Eswaran J, Knapp S, Elkins JM, Structure. 2013 Jun 4;21(6):986-96. doi: 10.1016/j.str.2013.03.012. Epub 2013 May, 9. PMID:23665168
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (124 Kb) [Save to disk]
  • Biological Unit Coordinates (2wo6.pdb1.gz) 59 Kb
  • Biological Unit Coordinates (2wo6.pdb2.gz) 61 Kb
  • LPC: Ligand-Protein Contacts for 2WO6
  • CSU: Contacts of Structural Units for 2WO6
  • Structure Factors (485 Kb)
  • Retrieve 2WO6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2WO6 from S2C, [Save to disk]
  • Re-refined 2wo6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2WO6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2WO6
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2WO6, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2wo6] [2wo6_C] [2wo6_B] [2wo6_A]
  • SWISS-PROT database: [Q13627] [Q0QD46]
  • Domain organization of [DYR1A_HUMAN] [Q0QD46_HUMAN] by SWISSPFAM
  • Domain found in 2WO6: [S_TKc ] by SMART
  • Other resources with information on 2WO6
  • Community annotation for 2WO6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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