2WQL Allergen date Aug 24, 2009
title Crystal Structure Of The Major Carrot Allergen Dau C 1
authors Z.Markovic-Housley, A.Basle, S.Padavattan, K.Hoffmann-Sommergru T.Schirmer
compound source
Molecule: Major Allergen Dau C 1
Chain: A, B, C, D
Synonym: Cr16, Pathogenesis-Related Protein Gea20
Engineered: Yes
Mutation: Yes
 Organism_scientific: Daucus Carota
Organism_common: Carrot
Organism_taxid: 4039
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: M15
Expression_system_plasmid: Pds 56
symmetry Space Group: P 41 3 2
R_factor 0.221 R_Free 0.237
crystal
cell
length a length b length c angle alpha angle beta angle gamma
189.948 189.948 189.948 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand CL, P4C, PEG enzyme
note 2WQL supersedes 2VJG
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • protein phosphatase inhibito...


    • Primary referenceStructure of the major carrot allergen Dau c 1., Markovic-Housley Z, Basle A, Padavattan S, Maderegger B, Schirmer T, Hoffmann-Sommergruber K, Acta Crystallogr D Biol Crystallogr. 2009 Nov;65(Pt 11):1206-12. Epub 2009, Oct 22. PMID:19923716
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (99 Kb) [Save to disk]
  • Biological Unit Coordinates (2wql.pdb1.gz) 135 Kb
  • Biological Unit Coordinates (2wql.pdb2.gz) 135 Kb
  • LPC: Ligand-Protein Contacts for 2WQL
  • CSU: Contacts of Structural Units for 2WQL
  • Structure Factors (1516 Kb)
  • Retrieve 2WQL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2WQL from S2C, [Save to disk]
  • Re-refined 2wql structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2WQL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2WQL
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2WQL, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2wql_D] [2wql_C] [2wql_B] [2wql] [2wql_A]
  • SWISS-PROT database: [O04298]
  • Domain organization of [DAU1_DAUCA] by SWISSPFAM
    • Other resources with information on 2WQL
  • Community annotation for 2WQL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science