2WQU Cell Invasion date Aug 27, 2009
title Internalin Domain Of Listeria Monocytogenes Inlb: Triclinic Form
authors H.H.Niemann, D.W.Heinz
compound source
Molecule: Internalin B
Chain: A, B, C, D, E, F
Fragment: Internalin Domain, Residues 36-321
Engineered: Yes
Organism_scientific: Listeria Monocytogenes
Organism_taxid: 169963
Strain: Egd-E
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Codonplus
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Petm30
symmetry Space Group: P 1
R_factor 0.191 R_Free 0.249
crystal
cell
length a length b length c angle alpha angle beta angle gamma
59.660 70.650 124.660 74.47 83.13 85.65
method X-Ray Diffractionresolution 2.60 Å
ligand GOL, SO4 enzyme
Primary referenceLigand-Mediated Dimerization of the Met Receptor Tyrosine Kinase by the Bacterial Invasion Protein InlB., Ferraris DM, Gherardi E, Di Y, Heinz DW, Niemann HH, J Mol Biol. 2009 Nov 6. PMID:19900460
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (274 Kb) [Save to disk]
  • Biological Unit Coordinates (2wqu.pdb1.gz) 48 Kb
  • Biological Unit Coordinates (2wqu.pdb2.gz) 48 Kb
  • Biological Unit Coordinates (2wqu.pdb3.gz) 45 Kb
  • Biological Unit Coordinates (2wqu.pdb4.gz) 49 Kb
  • Biological Unit Coordinates (2wqu.pdb5.gz) 49 Kb
  • Biological Unit Coordinates (2wqu.pdb6.gz) 49 Kb
  • LPC: Ligand-Protein Contacts for 2WQU
  • CSU: Contacts of Structural Units for 2WQU
  • Structure Factors (910 Kb)
  • Retrieve 2WQU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2WQU from S2C, [Save to disk]
  • Re-refined 2wqu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2WQU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2WQU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2WQU, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2wqu_A] [2wqu_B] [2wqu_E] [2wqu_D] [2wqu_C] [2wqu] [2wqu_F]
  • SWISS-PROT database: [P25147]
  • Domain organization of [INLB_LISMO] by SWISSPFAM
  • Domain found in 2WQU: [LRR ] by SMART
  • Other resources with information on 2WQU
  • Community annotation for 2WQU at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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