2WQV Cell Invasion date Aug 27, 2009
title Internalin Domain Of Listeria Monocytogenes Inlb: Rhombohedr Form
authors H.H.Niemann, D.W.Heinz
compound source
Molecule: Internalin B
Chain: A, B
Fragment: Internalin Domain, Residues 36-321
Engineered: Yes
 Organism_scientific: Listeria Monocytogenes
Organism_taxid: 169963
Strain: Egd-E
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Codonplus
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Petm30
symmetry Space Group: H 3 2
R_factor 0.203 R_Free 0.238
crystal
cell
length a length b length c angle alpha angle beta angle gamma
185.900 185.900 115.070 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.80 Å
ligand PG4, PGE enzyme
Primary referenceLigand-Mediated Dimerization of the Met Receptor Tyrosine Kinase by the Bacterial Invasion Protein InlB., Ferraris DM, Gherardi E, Di Y, Heinz DW, Niemann HH, J Mol Biol. 2009 Nov 6. PMID:19900460
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (97 Kb) [Save to disk]
  • Biological Unit Coordinates (2wqv.pdb1.gz) 45 Kb
  • Biological Unit Coordinates (2wqv.pdb2.gz) 47 Kb
  • LPC: Ligand-Protein Contacts for 2WQV
  • CSU: Contacts of Structural Units for 2WQV
  • Structure Factors (162 Kb)
  • Retrieve 2WQV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2WQV from S2C, [Save to disk]
  • Re-refined 2wqv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2WQV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2WQV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2WQV, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2wqv_B] [2wqv] [2wqv_A]
  • SWISS-PROT database: [P25147]
  • Domain organization of [INLB_LISMO] by SWISSPFAM
  • Domain found in 2WQV: [LRR ] by SMART
    • Other resources with information on 2WQV
  • Community annotation for 2WQV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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