4V5F The structure of the ribosome with elongation factor G trapped in the post-translocational state date
authors Gao, Y.G., Selmer, M., Dunham, C.M., Weixlbaumer, A., Kelley, A.C., Ramakrishnan, V.
compound source
symmetry
R_factor
R_Free 0.260
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.60
note 4V5F supersedes 2WRI, 2WRJ, 2WRK, 2WRL
Gene
Ontology
ChainFunctionProcessComponent
AB, CB


AC, CC


AH, CH


AI, CI


AL, CL


AM, CM


AN, CN


AO, CO


AS, CS


AT, CT


AU, CU


AY, CY


B0, D0


B1, D1


B3, D3


B4, D4


B6, D6


B7, D7


BC, DC


BE, DE


BF, DF


BN, DN


BO, DO


BQ, DQ


BS, DS


BT, DT


BW, DW


BX, DX


BY, DY


CD, AD


CE, AE


CF, AF


CG, AG


CJ, AJ


CK, AK


CP, AP


CQ, AQ


CR, AR


D2, B2


D5, B5


D8, B8


D9, B9


DD, BD


DG, BG


DH, BH


DK, BK


DP, BP


DR, BR


DU, BU


DV, BV


DZ, BZ


Primary referenceThe structure of the ribosome with elongation factor G trapped in the posttranslocational state., Gao YG, Selmer M, Dunham CM, Weixlbaumer A, Kelley AC, Ramakrishnan V, Science. 2009 Oct 30;326(5953):694-9. PMID:19833919
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1288 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 4V5F
  • Structure Factors (6866 Kb)
  • Retrieve 4V5F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4V5F from S2C, [Save to disk]
  • View 4V5F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4V5F
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4v5f_AC] [4v5f_DF] [4v5f_CC] [4v5f_CR] [4v5f_DJ] [4v5f_CK] [4v5f_B0] [4v5f_D9] [4v5f_BT] [4v5f_B5] [4v5f_AW] [4v5f_CB] [4v5f_CH] [4v5f_D8] [4v5f_AS] [4v5f_CY] [4v5f_DM] [4v5f_BM] [4v5f_Dl] [4v5f_CS] [4v5f_CP] [4v5f_DN] [4v5f_AT] [4v5f_BU] [4v5f_DW] [4v5f_DC] [4v5f_Bm] [4v5f_Dm] [4v5f_B8] [4v5f_BL] [4v5f_AF] [4v5f_D2] [4v5f_AX] [4v5f_B7] [4v5f_DB] [4v5f_CQ] [4v5f_B3] [4v5f_AI] [4v5f_CU] [4v5f_B2] [4v5f_DD] [4v5f_AG] [4v5f_D3] [4v5f_AR] [4v5f_AK] [4v5f_BE] [4v5f_DE] [4v5f_CO] [4v5f_BP] [4v5f_AY] [4v5f_AP] [4v5f_BQ] [4v5f_CJ] [4v5f_DR] [4v5f_DP] [4v5f_CF] [4v5f_D5] [4v5f_D0] [4v5f_CE] [4v5f_AA] [4v5f_B4] [4v5f_DS] [4v5f_DA] [4v5f_BZ] [4v5f_B9] [4v5f_BS] [4v5f_CX] [4v5f_AE] [4v5f_BA] [4v5f_DY] [4v5f_DO] [4v5f_BG] [4v5f_BV] [4v5f_BX] [4v5f_AQ] [4v5f_BK] [4v5f_AB] [4v5f_DU] [4v5f_DH] [4v5f_D1] [4v5f_AM] [4v5f_B6] [4v5f_BH] [4v5f_Bl] [4v5f_BY] [4v5f_BD] [4v5f_CV] [4v5f_DG] [4v5f_DT] [4v5f_CG] [4v5f_BF] [4v5f_AH] [4v5f_D7] [4v5f_CT] [4v5f_CW] [4v5f_AJ] [4v5f_AU] [4v5f_AD] [4v5f_CD] [4v5f_BJ] [4v5f_BC] [4v5f_CM] [4v5f_AN] [4v5f_DQ] [4v5f_D4] [4v5f_BB] [4v5f_BW] [4v5f_AV] [4v5f_DL] [4v5f_DZ] [4v5f_DX] [4v5f_CI] [4v5f_CA] [4v5f_AL] [4v5f_CL] [4v5f_B1] [4v5f_DK] [4v5f_BN] [4v5f_BR] [4v5f] [4v5f_DV] [4v5f_D6] [4v5f_AO] [4v5f_CN] [4v5f_BO]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4V5F: [EFG_C] [EFG_IV] [KH] [KOW] [RL11] [Ribosomal_L14] [Ribosomal_L2] [Ribosomal_L2_C] [Ribosomal_S10] [Ribosomal_S15] [Ribosomal_S4] [S4 ] by SMART
  • Other resources with information on 4V5F
  • Community annotation for 4V5F at PDBWiki (http://pdbwiki.org)

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