4V5G The crystal structure of the 70S ribosome bound to EF-Tu and tRNA date
authors Schmeing, T.M., Voorhees, R.M., Ramakrishnan, V.
compound source
symmetry
R_factor
R_Free 0.3150
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.60
note 4V5G supersedes 2WRN, 2WRO, 2WRQ, 2WRR
Gene
Ontology
ChainFunctionProcessComponent
AB, CB


AC, CC


AH, CH


AI, CI


AL, CL


AM, CM


AN, CN


AO, CO


AS, CS


AT, CT


AU, CU


B0, D0


B1, D1


B3, D3


B4, D4


B6, D6


B7, D7


BC, DC


BE, DE


BF, DF


BN, DN


BO, DO


BQ, DQ


BS, DS


BT, DT


BW, DW


BX, DX


BY, DY


CD, AD


CE, AE


CF, AF


CG, AG


CJ, AJ


CK, AK


CP, AP


CQ, AQ


CR, AR


CZ, AZ


D2, B2


D5, B5


D8, B8


D9, B9


DD, BD


DG, BG


DH, BH


DP, BP


DR, BR


DU, BU


DV, BV


DZ, BZ


Primary referenceThe Crystal Structure of the Ribosome Bound to EF-Tu and Aminoacyl-tRNA., Schmeing TM, Voorhees RM, Kelley AC, Gao YG, Murphy FV 4th, Weir JR, Ramakrishnan V, Science. 2009 Oct 15. PMID:19833920
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1272 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 4V5G
  • Structure Factors (5576 Kb)
  • Retrieve 4V5G in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4V5G from S2C, [Save to disk]
  • View 4V5G in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4V5G
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4v5g_DH] [4v5g_AT] [4v5g_CP] [4v5g_BJ] [4v5g_DB] [4v5g_BW] [4v5g_BP] [4v5g_DY] [4v5g_BV] [4v5g_BB] [4v5g_DJ] [4v5g_AC] [4v5g_AB] [4v5g_CA] [4v5g_B1] [4v5g_BC] [4v5g_CD] [4v5g_DO] [4v5g_BQ] [4v5g_B7] [4v5g_AA] [4v5g_AK] [4v5g_CU] [4v5g_B2] [4v5g_CB] [4v5g_AX] [4v5g_CN] [4v5g_AS] [4v5g_DK] [4v5g_D9] [4v5g_BX] [4v5g_DA] [4v5g_D5] [4v5g_AU] [4v5g_CO] [4v5g_DG] [4v5g_DX] [4v5g_AN] [4v5g_BE] [4v5g_D1] [4v5g_BK] [4v5g_BY] [4v5g_DN] [4v5g_BG] [4v5g_BS] [4v5g_D4] [4v5g_D3] [4v5g_AM] [4v5g_CK] [4v5g_B4] [4v5g_AQ] [4v5g_CM] [4v5g_DR] [4v5g_AR] [4v5g_AE] [4v5g_AW] [4v5g_DP] [4v5g_B0] [4v5g_AP] [4v5g_CI] [4v5g_DS] [4v5g_DE] [4v5g_CV] [4v5g_CQ] [4v5g_AH] [4v5g_D6] [4v5g_D8] [4v5g_AG] [4v5g_BN] [4v5g_CY] [4v5g_AD] [4v5g_CR] [4v5g_DD] [4v5g_BH] [4v5g_BF] [4v5g_BD] [4v5g_DF] [4v5g_AV] [4v5g_DW] [4v5g_BR] [4v5g_AO] [4v5g_AI] [4v5g_D0] [4v5g_AL] [4v5g_CF] [4v5g_B9] [4v5g_CG] [4v5g_AZ] [4v5g_CZ] [4v5g_DT] [4v5g_DQ] [4v5g_AJ] [4v5g_BT] [4v5g_AF] [4v5g_CW] [4v5g_D7] [4v5g] [4v5g_DC] [4v5g_D2] [4v5g_B6] [4v5g_BU] [4v5g_CL] [4v5g_BZ] [4v5g_CJ] [4v5g_CT] [4v5g_AY] [4v5g_CH] [4v5g_CS] [4v5g_B5] [4v5g_DV] [4v5g_DZ] [4v5g_B3] [4v5g_BO] [4v5g_CE] [4v5g_DU] [4v5g_CC] [4v5g_BA] [4v5g_CX] [4v5g_B8]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4V5G: [KH] [KOW] [Ribosomal_L14] [Ribosomal_L2] [Ribosomal_L2_C] [Ribosomal_S10] [Ribosomal_S15] [Ribosomal_S4] [S4 ] by SMART
  • Other resources with information on 4V5G
  • Community annotation for 4V5G at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science