OCA Atlas for 2WSS

2WSS

Hydrolase

date

Sep 09, 2009

title

The Structure Of The Membrane Extrinsic Region Of Bovine Atp

authors

D.M.Rees, A.G.W.Leslie, J.E.Walker

compound

source

Molecule: Atp Synthase Subunit Alpha, Mitochondrial
Chain: A, B, C, J, K, L

Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913

Molecule: Atp Synthase Subunit Beta, Mitochondrial
Chain: D, E, F, M, N, O
Fragment: Residues 47-528
Ec: 3.6.3.14

Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913

Molecule: Atp Synthase Subunit Gamma, Mitochondrial
Chain: G, P
Fragment: Heart Isoform, Residues 26-297
Synonym: F-Atpase Gamma Subunit

Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913

Molecule: Atp Synthase Subunit Delta, Mitochondrial
Chain: H, Q
Synonym: F-Atpase Delta Subunit

Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913

Molecule: Atp Synthase Subunit Epsilon, Mitochondrial
Chain: I, R
Engineered: Yes

Synthetic: Yes
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913

Molecule: Atp Synthase Subunit O, Mitochondrial
Chain: S, W
Synonym: Oligomycin Sensitivity Conferral Protein, Oscp
Engineered: Yes

Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_plasmid: Prunb99-214d1-120f6

Molecule: Atp Synthase Subunit B, Mitochondrial
Chain: T, X
Fragment: Residues 141-256
Engineered: Yes

Molecule: Atp Synthase Subunit D, Mitochondrial
Chain: U
Fragment: Residues 2-119
Engineered: Yes

Molecule: Atp Synthase-Coupling Factor 6, Mitochondrial
Chain: V, Z
Synonym: Atpase Subunit F6
Engineered: Yes

symmetry

Space Group: P 21 21 21

R_factor

0.217

R_Free

0.271

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma
158.244	231.245	286.361	90.00	90.00	90.00

method

X-Ray Diffraction

resolution

3.20 Å

ligand

ADP, ANP, MG, MSE

enzyme

Hydrolase E.C.3.6.3.14 BRENDA

note

2WSS is a representative structure

Gene
Ontology

Chain	Function	Process	Component
F, N, E, M, O, D
K, C, L, A, J, B
P, G
Q, H
R, I
S, W
T, X
U
V, Z

Primary reference

The structure of the membrane extrinsic region of bovine ATP synthase., Rees DM, Leslie AG, Walker JE, Proc Natl Acad Sci U S A. 2009 Dec 7. PMID:19995987

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1111 Kb) [Save to disk]

Biological Unit Coordinates (2wss.pdb1.gz) 567 Kb

Biological Unit Coordinates (2wss.pdb2.gz) 544 Kb

LPC: Ligand-Protein Contacts for 2WSS

CSU: Contacts of Structural Units for 2WSS

Structure Factors (2170 Kb)

Retrieve 2WSS in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 2WSS from S2C, [Save to disk]

Re-refined 2wss structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2WSS in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2WSS

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala

Dipole moment, from Dipole Server at Weizmann Institute

3D motif for 2WSS, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2wss_E] [2wss_I] [2wss_Z] [2wss_P] [2wss_Q] [2wss_U] [2wss_H] [2wss_K] [2wss_A] [2wss] [2wss_O] [2wss_J] [2wss_X] [2wss_D] [2wss_T] [2wss_R] [2wss_S] [2wss_M] [2wss_C] [2wss_N] [2wss_V] [2wss_L] [2wss_G] [2wss_B] [2wss_W] [2wss_F]

SWISS-PROT database: [P13619] [P05632] [P13620] [P02721] [P19483] [P00829] [P05630] [P05631] [P13621]

Domain organization of [AT5F1_BOVIN] [ATP5E_BOVIN] [ATP5H_BOVIN] [ATP5J_BOVIN] [ATPA_BOVIN] [ATPB_BOVIN] [ATPD_BOVIN] [ATPG_BOVIN] [ATPO_BOVIN] by SWISSPFAM

Domain found in 2WSS: [AAA ] by SMART

Other resources with information on 2WSS

Community annotation for 2WSS at PDBWiki (http://pdbwiki.org)

MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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